Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c15
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    56   6e-09
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   4.5  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    26   5.9  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
 Frame = +3

Query: 183 PCEELQTGLMCDIGLDNREPATIQRLIASGMTVARLNMQNLEPEACAQLIQSIRQAVYNY 362
           P    +T ++C IG  +    T+ +L  +GM + R+N  +   E    +I + R+A    
Sbjct: 22  PAVNRRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASATN 81

Query: 363 SLELDFVYPLAVVVDVKGPDIVTGGLKNGPHATVELLQTETIRLTIDPSWRDCGTSECLY 542
            L     +PLA+ +D KGP+I TG    G    +       +  T D ++ +    + +Y
Sbjct: 82  PL-----FPLAIALDTKGPEIRTGLTVGGTDYPIS--SGHEMIFTTDDAYAEKCNDKVMY 134

Query: 543 VGYDQLTD-LNTDDIIYIDSLSPGKIKLVVTEVGDD 647
           + Y  +T  +    IIY+D    G +   V E  DD
Sbjct: 135 IDYKNITKVIQPGRIIYVDD---GILSFTVIEKVDD 167


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 60  IHTMSLPWHIPLEAAPCFKEKLNAV 134
           IH++ +PW  PL  A C ++  N +
Sbjct: 240 IHSVEIPWVEPLALADCIQKSGNPI 264


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 549 YDQLTDLNTDDIIYIDSLSPGKIKLVVTEVGDDSLE 656
           YD+++  +T DI  + + +PGK   +V    D S E
Sbjct: 710 YDKISPFDTVDIDGLTTFAPGKPLTLVVHPADGSAE 745


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
            catalytic subunit|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 573  YSNLSIDHILRKGIPMS-HSPSN 508
            +S++ IDH+LRK + M   +PSN
Sbjct: 933  FSSVDIDHVLRKDVKMDCVTPSN 955


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,885
Number of Sequences: 5004
Number of extensions: 48163
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)