Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c14
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 121 HLRYYPPGLILEYSQKGTIKNKEIDLLDLN 210
           H+    PG +L++ +KG +K   +  L L+
Sbjct: 325 HILVATPGRLLDFVEKGRVKFSSVQFLVLD 354


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -1

Query: 496 SSLAPYRFRRPISYKFCRSCPSNIFSQFCQRPHW 395
           S  A  + R   S  FC   P  +   F    HW
Sbjct: 208 SKAALAKLRNVHSSSFCIPLPVRVLPNFPSSGHW 241


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 157 IPISIPEGNIEGEISITSWYFLLKNYTXXXXXXXXXIY*NSCKI 26
           +P  +   N +GE  +T+    + +YT         I+ +SC+I
Sbjct: 104 LPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEI 147


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   LTKSFSKTILQLFQYIFYAIMIIK 74
           L + F +T+L    ++FY I   K
Sbjct: 46  LVRGFPRTVLDKEVHVFYGIPFAK 69


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 3   LTKSFSKTILQLFQYIFYAIMIIK 74
           L + F +T+L    ++FY I   K
Sbjct: 46  LVRGFPRTVLDKEVHVFYGIPFAK 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,997
Number of Sequences: 438
Number of extensions: 4184
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)