Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23c13
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.34
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 29 0.44
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 27 3.1
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 27 3.1
SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces pombe... 27 3.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.5
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 26 5.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.5
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 25 7.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 9.5
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 9.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 273
P PKP V P P PSGAPP + VA
Sbjct: 1122 PVPKPSVAAP-PVPVPSGAPPVPKPSVA 1148
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 273
P PKP V P P PSGAPP + VA
Sbjct: 1141 PVPKPSVAAP-PVPAPSGAPPVPKPSVA 1167
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPPAQRAPVA 273
P PKP V P P PSGAPP + VA
Sbjct: 1103 PVPKPSVAVP-PVPAPSGAPPVPKPSVA 1129
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPPAQRAPV 270
P PKP G P PP PS APP + V
Sbjct: 1180 PVPKPAAGVPPVPP-PSEAPPVPKPSV 1205
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPP 252
P PKP VG P PP PS APP
Sbjct: 1199 PVPKPSVGVPPVPP-PSTAPP 1218
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPPAQR 261
P PKP V P P SG PP +
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPK 1183
Score = 22.2 bits (45), Expect(2) = 4.9
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTPSGAPP 252
P P P P P PSGAPP
Sbjct: 1065 PVPAPSSEIP-SIPAPSGAPP 1084
Score = 21.8 bits (44), Expect(2) = 4.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 229 PTPSGAPPAQRAPVA 273
P PSG PP + VA
Sbjct: 1086 PAPSGIPPVPKPSVA 1100
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.34
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Frame = +1
Query: 190 PFPKPIVGKPCEPPTP---SGAPPAQRAPVAPYCHCDAHSY---SPRVEQYKQL----LE 339
P P PI+G P PP P +GA P P P Y +P+ E ++ L
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLT 811
Query: 340 KEQKLCQDYEQLRKQ 384
+EQK+ E+ RKQ
Sbjct: 812 EEQKI--QLEEARKQ 824
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 29.5 bits (63), Expect = 0.44
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 250 PAQRAP-VAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCD 426
P +R P V CH D H+ S ++ +EKE + D ++RK + +D +H D
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSEVRKFCYNCASD--EHFGD 200
Query: 427 D 429
D
Sbjct: 201 D 201
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 244 APPAQRAPVAPYCHCDAHSYSPRVEQYK 327
AP A + Y H H Y PR+E+ K
Sbjct: 99 APEAHEKALTFYHHLKLHPYGPRMEEMK 126
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 487 VADYRTIMASSQSSAPI 537
VA+YRT++ S QS+AP+
Sbjct: 138 VAEYRTLLNSMQSNAPV 154
>SPAC26H5.13c |||DUF1753 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 2 NLSSLFEEIFIQFKFLASKVILNYVGCQI 88
N S+LFE+IFIQ FL + VGC+I
Sbjct: 8 NWSALFEKIFIQKSFLGFCSL--RVGCEI 34
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 202 PIVGKPCEPPTPSGAPPAQRAPVAP 276
P + P PP P PP AP P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP 1724
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 262 APVAPYCHCDAHSYSPRVEQYKQLLEKEQKLCQDYEQLRKQMVSVT 399
A + P C + S R QY + L++ +++C++ L K + T
Sbjct: 112 ANIVPGCEKNKGSILQRTAQYIRSLKEMEEMCREKSNLEKLVADHT 157
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 196 PKPIVGKPCEPPTPSG--APPAQRAPVAPYCHCDAHSYSP 309
P P VG+ PPT SG PP Q+ P P + SP
Sbjct: 927 PPPKVGETYHPPTASGTRVPPVQQ-PSHPNPYTPVAPQSP 965
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 418 PCDDLDSKMTTMYQATYKKRSFPVADYRTIMASSQ 522
P ++ DS+ T ATY K FPVA + IM + Q
Sbjct: 4 PTNNNDSE-TKPNPATYWKSRFPVARIKKIMQADQ 37
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 310 RVEQYKQLLEKEQKLCQDYEQLRKQMVS 393
R+E+ + +EK+Q+ +YEQ R+ + S
Sbjct: 839 RLERMHKFIEKDQESIDNYEQNREALES 866
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 296 IPIHRE*NNTNSCSKKNRNYAKTMNSCGNRWSASQMTS 409
IP HR N+T S+K +++ T N +SQ +S
Sbjct: 66 IPFHRRANSTPEESRKRVSFSLTSNDGAKSDRSSQKSS 103
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +1
Query: 322 YKQLLEKEQKLCQDYEQLRKQMVSVTNDILDHPCDDLDSKMTTMYQATYKKRSFPVADYR 501
YK + E QK DY R + + + H D K+T+M+ +KK Y
Sbjct: 679 YKTVWEISQKTVIDYAADRGPFIDQSQSLNIHLKDPSYGKITSMHFYGWKKGLKTGMYYL 738
Query: 502 TIMASS 519
MA+S
Sbjct: 739 RTMAAS 744
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 382 QMVSVTNDILDHPCDDLDSKMTTMYQA 462
Q++ + ND L HP D D M Q+
Sbjct: 239 QLIHLFNDFLRHPVFDFDENAIEMLQS 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,345
Number of Sequences: 5004
Number of extensions: 45214
Number of successful extensions: 203
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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