Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c07
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...   160   1e-40
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   3.1  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score =  160 bits (389), Expect = 1e-40
 Identities = 75/157 (47%), Positives = 104/157 (66%), Gaps = 5/157 (3%)
 Frame = +1

Query: 157 RFLLEGQIXELI*TIIPAFTLIFIALPSLRLXYLLDELNNPLITLKSIGHQ*Y*RYEYSD 336
           ++   G I E I T+IPA  LI +ALPS +L YLLDE+  P +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 337 FXN-----IXFDSYIIPSNEIXNNEFRLLDVDXRIILPXNNQIRIIXTAXDVIHS*TIPS 501
           F       + FDSY++P  ++     R L+VD R++LP + +IR+I T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 502 LGIKVDANPGRLNQTNFFINRPGIFFGQCSEICGANH 612
           LGIK D  P RLNQ +  I+R G+F+GQCSE+CG  H
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFYGQCSELCGVLH 225


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +1

Query: 232 LPSLRLXYLLDELNN-PLITLKS 297
           LPS+RL Y+LD L   PL+ +K+
Sbjct: 430 LPSVRLSYILDTLEECPLLNIKT 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,589
Number of Sequences: 5004
Number of extensions: 25411
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)