Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23c04
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 28 0.60
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 26 2.4
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 4.3
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 4.3
SPAC1002.04c |taf11||transcription factor TFIID complex subunit ... 25 4.3
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 4.3
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.4
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 24 9.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 24 9.8
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 24 9.8
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 28.3 bits (60), Expect = 0.60
Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 268 AQEDSYFYDKQKEQLEKIRKKLKLN-PEISQKEDK*AEKLR 387
A+ED + + + EQL K+++ LKL+ E+ + E + +K++
Sbjct: 47 AKEDFFVHQHEIEQLRKLKESLKLHREELDELESRVDKKMK 87
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 2.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 31 EKNPKNMNSIKISAICSRCTNYLLPKQIA 117
+ N KN+ +I+ S +C+ Y P ++A
Sbjct: 414 KSNQKNVGTIRCSNLCTEIVEYSSPDEVA 442
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 191 DLEQERAEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSERN 331
D ++E ++S P + + P TT RRS W K+ N
Sbjct: 198 DKKRELELNNTEISQKPKRSRWDQAPPSVTQVSTTKRRSRWDKAPEN 244
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 46 NMNSIKISAICSRCTNYLLPKQIAGISDLNNHLNV 150
NMN ++ +C T + GIS + NHL +
Sbjct: 621 NMNDYSVTGVCIEETEKRPVFTMFGISGMGNHLQI 655
>SPAC1002.04c |taf11||transcription factor TFIID complex subunit
Taf11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +2
Query: 224 DLSGNP---AEASANTEQPKKIVTFTTNRRSNWKKSERN 331
D S +P A A ANT P ++ + NW + E N
Sbjct: 20 DQSNSPTAGAHAKANTASPAAEPAPSSKEKENWNRQEEN 58
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 292 DKQKEQLEKIRKKLKLNPEISQK 360
DK K +EK+ KL +PE+ QK
Sbjct: 290 DKMKGNMEKMAGKLTRDPELVQK 312
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 24.6 bits (51), Expect = 7.4
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 104 QNRLPELVTLTIILM*TCVEGLQLRLVYQDLEQERAEAAVDLSGNPAEASANTE-QPKKI 280
QN+ EL L +L + +LRL+ + LE ER + + + S++ E Q K +
Sbjct: 512 QNKEEELTELRKLLREQTQDSQKLRLLVEQLELERQDLKQAGENHYSNLSSDYETQIKSL 571
Query: 281 VTFTTNRRS 307
+ TN ++
Sbjct: 572 ESSLTNSQA 580
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 301 KEQLEKIRKKLKLNPEISQKED 366
KE ++KIRKKLK + +ED
Sbjct: 632 KEDMKKIRKKLKDYNRLFDEED 653
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 292 DKQKEQLEKIRKKLKLNPEISQKEDK*AEKLRQKHTKI 405
+K+++Q E+ KKL+ +I+ K+ K EKL ++ ++
Sbjct: 101 EKERQQREQ-EKKLREQEKIAAKKMKELEKLEKERIRL 137
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/34 (35%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 KQKEQLEKIRK-KLKLNPEISQKEDK*AEKLRQK 393
K+ ++LEK+ K +++L + +KE++ +KLR+K
Sbjct: 122 KKMKELEKLEKERIRLQEQQRRKEER-DQKLREK 154
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 9.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 170 QLRLVYQDLEQERAEAAVDLSGNPAEASANTEQPKKIVTFTTNRRSNWKKSER 328
Q+ +Y D + R EAA+ + + + T+QPK T N + KSER
Sbjct: 531 QISKLYID-GKHRCEAAISSHSSESHSKRTTQQPKS----TPNHTNIKVKSER 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,594
Number of Sequences: 5004
Number of extensions: 24490
Number of successful extensions: 103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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