Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23c02
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||...    29   0.82 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.4  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    26   4.4  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   5.8  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   5.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    25   7.6  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   7.6  

>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 209 TITRRWYPCNSFSRLTTKPLPPDLDVGSFSSKPAYSLFSWSAEK 78
           +I ++W P N FS + T    P L +   S K AY       EK
Sbjct: 70  SIGKKWKPGNGFSIIATHTDSPTLRLKPKSQKSAYGYLQVGVEK 113


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 17/33 (51%), Positives = 19/33 (57%)
 Frame = -2

Query: 308 AAFFLTSSRTTLPPKPMKPSAGGLASASVAPSP 210
           AA   TSS +TLPP P  P+A   ASA    SP
Sbjct: 896 AAMSRTSSVSTLPPPP--PTASMTASAPAIASP 926


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 544 CYEIGLCCQHKKLASKTPELLIVK 615
           C E+   C HKKL SK    L++K
Sbjct: 179 CAEVNFLCIHKKLRSKRLTPLLIK 202


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 330 PLFRLPAGCLLLDFVTHHVTPEANEAVSRWASLGIGS 220
           PLF+ PA       +++H +   +  +S WA L  GS
Sbjct: 361 PLFKSPAPYSPTSVISNHSSTGKSLVISEWAYLASGS 397


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 212 PTITRRWYPCNSFSRLTTKPLPPDLDVGSFSSKPAYSLFSWSAEK 78
           P+I  R    NS+ R+T +PL  +  +    SKP  ++F W  E+
Sbjct: 20  PSICERCLGDNSYVRMTKEPLGQECKI---CSKPC-TIFRWIKER 60


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 345 GFHFYPLFRLPAGCLLLDFVTHHVTPEA-NEAVSRWASLGIG 223
           G+H Y L+ +    ++L    +HV  +A  E++  W   G G
Sbjct: 410 GYHVYWLYPIAFVLIILGLFVYHVFVDATRESIKPWLKKGQG 451


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 290 SSRTTLPPKPMKPSAGGLASASVAPS 213
           +SRT+ PP P  PS    A  S+ PS
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPS 434


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -2

Query: 320 DYLQAAFFLTSSRTTLPPKPMKPSAGGLASASVAPSPTITRRWYPC--NSFSRLTTK-PL 150
           DYL +  FL S+      K  K S     S+++  +         C  +S S +TT+ P 
Sbjct: 56  DYLNSLQFLPSNFRPKTHKKKK-SVSSYLSSTIQKNANENIPHVQCRNDSQSTVTTRNPT 114

Query: 149 PPDLDVGSFSSKP 111
           P  ++VG + SKP
Sbjct: 115 PFKIEVGIYPSKP 127


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 79  FSADHEKSEYAGFDENEPTSRSGGKGLV 162
           FS D++   ++G+D+ +P  +    GLV
Sbjct: 276 FSLDYQSQWFSGWDDTDPNPKIPSLGLV 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,140
Number of Sequences: 5004
Number of extensions: 49185
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)