Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23c02
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 82 3e-16
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 74 9e-14
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 30 1.5
11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383... 30 2.0
08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237 29 2.6
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 29 2.6
04_03_0266 + 13648287-13649099,13649186-13649524 29 2.6
10_08_0933 + 21661209-21662813 29 3.4
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 3.4
01_06_0328 + 28507942-28508610,28509669-28510826 29 3.4
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 29 4.5
07_01_0880 + 7301042-7301548 29 4.5
01_01_0156 - 1364856-1365401 29 4.5
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 28 6.0
05_02_0028 - 5764980-5766374 28 6.0
11_06_0642 + 25755000-25755896 28 7.9
03_05_0056 - 20349217-20349484,20349563-20350032,20350049-203504... 28 7.9
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 82.2 bits (194), Expect = 3e-16
Identities = 40/70 (57%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 EYAGFDENEPTSRSGGKGLVVRRLKELHGYQRLVIVGDGATDAEASPP--ADGFIGFGGN 276
EYAGFD EPTSRSGGK L V+++++ HGY+ LV++GDGATD EA P AD FI + G
Sbjct: 254 EYAGFDPTEPTSRSGGKALAVQQIRQNHGYKTLVMIGDGATDLEARQPGGADLFICYAGV 313
Query: 277 VVRDEVKKKA 306
+R+ V KA
Sbjct: 314 QMREAVAAKA 323
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 74.1 bits (174), Expect = 9e-14
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Frame = +1
Query: 103 EYAGFDENEPTSRSGGKGLVVRRLKELHGYQRLVIVGDGATDAEASPP--ADGFIGFGGN 276
EY GFD +EPTSRSGGK + V+ +++ GY+ L +VGDGATD EA P AD FI + G
Sbjct: 91 EYVGFDPSEPTSRSGGKAVAVQNIRQKCGYRTLFMVGDGATDLEARQPNGADLFICYAGV 150
Query: 277 VVRDEVKKKA 306
+R+ V KA
Sbjct: 151 QMREAVASKA 160
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 300 LLDFVTHHVTPEANEAVSRWASLGIGSPVPDDHQALV 190
L + V H V P A E + R A+ G P PD H+ +V
Sbjct: 22 LKEMVAHGVLP-AKEIIGRRAACGEAFPTPDTHEVVV 57
>11_06_0033 -
19437746-19437916,19438063-19438145,19438266-19438359,
19438478-19438551,19438825-19438861,19440767-19440844,
19440927-19441022,19441719-19441815,19441910-19442015,
19442136-19442208,19442537-19442680,19443241-19443681
Length = 497
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 308 AAFFLTSSRTTLPPKPMKPSAGGLASASVAP 216
A+ L+S+ + LPPKP PS+ +SAS P
Sbjct: 2 ASSLLSSAASGLPPKPQPPSSTPPSSASARP 32
>08_01_0529 + 4589434-4589652,4589897-4589953,4590106-4590237
Length = 135
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = -2
Query: 341 FISTLCLDYLQAAFFLTSSRTTL--PP---KPMKPSAGGLASASVAPS 213
++S LC +QAA TT PP +P PS+GG + A VAP+
Sbjct: 5 YVSRLCARAVQAAVRAEQPATTRRRPPHAGRPPPPSSGGGSPAEVAPA 52
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 336 FYPLFRLPAGCLLLDFVTHHVTPEANEAVSRWASLGIGSPVPDDHQALVPVQFLQS 169
+YP++R+P G F+T+H ++ W G S DD + ++PV L+S
Sbjct: 1442 WYPIYRIPDGKFQAAFLTYH-------SLGHWIVQG-ASEQADDSRVVLPVTGLES 1489
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 288 VTHHVTPEANEAVSRWASLGIGSPVPDDHQALV 190
V H V P A E + W + G P PD H+ +V
Sbjct: 2 VAHGVLP-AKEIIGWWPAFGEAFPTPDTHEVVV 33
>10_08_0933 + 21661209-21662813
Length = 534
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 308 AAFFLTSSRTTLPPKPMKPSAGGLASASVA--PSPTITRRWYPCNSFSRLTTKPLPPDLD 135
+A +T++ P P+ P+A A+A+ A P+ T R + N RL +P P L
Sbjct: 2 SAAAVTATPRHARPSPLNPNARAAAAAAAAAPPNAVSTTRTHLAN-LDRLLVRPPPLPLP 60
Query: 134 VGSFSSKPAYSL 99
+ + + PA L
Sbjct: 61 LQNKGAPPADDL 72
>02_01_0190 +
1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = -2
Query: 296 LTSSRTTLP-PKPM-KPSAGGLASASVAPSPTITR---RWYPCNSFSRLTTKPLPPDLDV 132
L S R P PKP PS S S +PS T++ R + N+ S ++KPLP
Sbjct: 76 LASIRAPAPSPKPSPSPSPSPRRSTSASPSATLSSLVSRTFSNNAASSSSSKPLPSLFRG 135
Query: 131 GSFSSKPAYSLFSWSA 84
S KP +L + +A
Sbjct: 136 VRPSPKPGAALAAAAA 151
>01_06_0328 + 28507942-28508610,28509669-28510826
Length = 608
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 344 VFISTLCLDYLQAAFFLTSSRTTLPPKP--MKPSAGGLASASVAPSPTITRRWYPCNSFS 171
+F S + +DYL FFL S TT PKP P A G PS P ++S
Sbjct: 133 LFFSGISVDYL--VFFLRCSFTTFAPKPANFNPIACGSFINLTRPSFVFPDELVPPGNWS 190
Query: 170 RL 165
+L
Sbjct: 191 QL 192
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 172 LKELHGYQRLV-IVGDGATDAEASPPADGFIGFGGNV 279
+ EL +LV +VGDG DA A AD I GG V
Sbjct: 799 ISELQKEHKLVAMVGDGINDAAALASADVGIAMGGGV 835
>07_01_0880 + 7301042-7301548
Length = 168
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 299 FLTSSRTTLPPKPMKPSA---GGLASASVAPSPTITRRWYPCNS 177
F+ S+ P + P++ GG A ++P P+ + +W CNS
Sbjct: 33 FVWESKPGTPKSTVVPASAADGGYAMPPISPPPSYSYQWSSCNS 76
>01_01_0156 - 1364856-1365401
Length = 181
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/62 (33%), Positives = 27/62 (43%)
Frame = -2
Query: 329 LCLDYLQAAFFLTSSRTTLPPKPMKPSAGGLASASVAPSPTITRRWYPCNSFSRLTTKPL 150
L L L AA T+ T P+ GG S +PT + W C++ RL TK
Sbjct: 9 LLLAGLTAAALGTADDDTTTNTIRLPTDGG----SAQQAPTKKKPWKCCDNIERLPTKTN 64
Query: 149 PP 144
PP
Sbjct: 65 PP 66
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 374 LKGSLRSRGAVFISTL--CLDYLQAAFFLTSSRTTLPPKPMKPSAGGLASAS 225
L+G ++ RG + + +L C + ++ +R + PP P P+A A+ S
Sbjct: 7 LQGVVQGRGGLVLGSLIPCALFYFFQLYIKRNRASPPPPPGSPTAASAAAVS 58
>05_02_0028 - 5764980-5766374
Length = 464
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 276 VTPEANEAVSRWASLGIGSPVPDDHQAL 193
++P+A A+ R A G+GSPV D H +L
Sbjct: 314 LSPDAAGALRRGAWAGVGSPVNDVHVSL 341
>11_06_0642 + 25755000-25755896
Length = 298
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 300 LLDFVTHHVTPEANEAVSRWASLGIGSPVPDDHQALVPVQFLQSS 166
L + V H V P A E + + G P PD H+A+V F S
Sbjct: 22 LKEMVAHGVLP-AKEIIGWRPACGEAFPTPDTHEAVVFSHFFYGS 65
>03_05_0056 -
20349217-20349484,20349563-20350032,20350049-20350424,
20350546-20350568
Length = 378
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 145 GGKGLVVRRLKELHGYQRL-VIVGDGATDAEASPPA 249
GG G RR K HG+ L + D +ASPPA
Sbjct: 230 GGSGKKRRRCKRCHGFGHLQKTCNEPVYDPDASPPA 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,075
Number of Sequences: 37544
Number of extensions: 342920
Number of successful extensions: 1387
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -