Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b22
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   3.7  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.5  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    25   8.5  

>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 302 RAGERKLENQRFAMNQMNHFQ*TKISNCTNLFYFQ*TLD 418
           R   RK+E +   +N+ N+   +  +NC   F  Q  LD
Sbjct: 3   RTKRRKIEKEASLLNERNNLLESDFANCYRAFQHQLKLD 41


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 238 LLKVKFADVFTIDLSSIHSSNKGRRKKTRKSKVCHE 345
           L KVK  D    DL  +    +G+RKK R+    +E
Sbjct: 712 LYKVKKPDTLGRDLKQVTLFEEGKRKKLRRPAKTNE 747


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = +1

Query: 241 LKVKFADVFTIDLSSIHSSNKGRRKKTRKSKVCHESDESLPI 366
           +  K  D    D SSI S     R        C  SD++ PI
Sbjct: 284 ISAKPLDTDRYDTSSIQSLKNAPRDSMESESFCSSSDDAKPI 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,993
Number of Sequences: 5004
Number of extensions: 49547
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)