Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b22
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672...    28   5.0  
12_01_0835 + 7794487-7794580,7796188-7796291,7796619-7797112,779...    28   6.5  

>04_04_0788 +
           28064684-28066584,28066692-28066815,28066908-28067285,
           28067286-28067488,28067615-28067897
          Length = 962

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/72 (20%), Positives = 36/72 (50%)
 Frame = +1

Query: 268 TIDLSSIHSSNKGRRKKTRKSKVCHESDESLPIDENKQLYQSILFPMNIRLLMKTIKLNP 447
           T++ S    +  G  K+ +K K     D+ + ID+  +L Q  +   +++ LMK ++   
Sbjct: 531 TVNPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAWSMKRLMKIVRYGA 590

Query: 448 ICILIYKKENST 483
           +  +  + +++T
Sbjct: 591 LTTMDEQIKHAT 602


>12_01_0835 +
           7794487-7794580,7796188-7796291,7796619-7797112,
           7797219-7797358,7797516-7797817,7798312-7798578
          Length = 466

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 532 YLSKLLHGDNPESVQFSADC 591
           YL  +LHGD   +V  SADC
Sbjct: 51  YLQDVLHGDTASNVATSADC 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,265
Number of Sequences: 37544
Number of extensions: 246066
Number of successful extensions: 571
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)