Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b22
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z68003-4|CAA91978.2|  277|Caenorhabditis elegans Hypothetical
           protein E02H4.5 protein.
          Length = 277

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 259 DVFTIDLSSIHSSNKGRRKKTRKSKVCH--ESDESLP 363
           D +   L SI+S  KG+ K+T K    H  + DE LP
Sbjct: 109 DCYATQLPSINSFFKGKSKRTSKKMKAHLRQIDEKLP 145


>Z81500-2|CAB04096.1|  394|Caenorhabditis elegans Hypothetical
           protein F11D11.3 protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +3

Query: 357 TSNRRK*AIVPIYFISNEH*IANENYKVKSYLYLNIQKGKFYTVIW 494
           +  +R  + + +Y I +E  I N+N  V +YL LN    K+    W
Sbjct: 111 SKKKRADSCLGVYNIGHETGIGNDNIYVCTYLILNTSLNKYVISQW 156


>U41110-4|AAA82419.1|  575|Caenorhabditis elegans Hypothetical
           protein ZK682.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 266 NTSANLTLRRNSLSELPVLKL-FAVISNKNIE 174
           NT  NL L  NS++E+PV  L F V+S+ ++E
Sbjct: 211 NTLTNLNLGLNSINEVPVGALDFPVLSSLSLE 242


>U21310-1|AAA62519.1|  997|Caenorhabditis elegans Hypothetical
           protein F40H6.2 protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 442 NPICILIYKKENSTQLFGETKIPWDP 519
           NPI  ++   +N TQ  G   +PW P
Sbjct: 149 NPIWTILKNSKNGTQGVGAVNLPWTP 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,285,760
Number of Sequences: 27780
Number of extensions: 265769
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)