Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b21
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   3.9  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   9.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.0  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    25   9.0  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 32  YERFLRDTTEHNGVILLV 85
           YE+FL + T+H GV LLV
Sbjct: 126 YEQFLHELTKHPGVNLLV 143


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 532 DNNCTLNACVEALWY 488
           DNN T N CV   WY
Sbjct: 415 DNNVTTNVCVGKEWY 429


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 228 PENTASTAGWND 263
           P +T++TAGWND
Sbjct: 853 PPSTSTTAGWND 864


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 291 NSSCEPRRRNH 259
           NS CEPRRR H
Sbjct: 328 NSLCEPRRRQH 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,548
Number of Sequences: 5004
Number of extensions: 59512
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)