Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23b21
(626 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015480-1|AAH15480.1| 278|Homo sapiens membrane-associated rin... 31 4.4
AL161652-2|CAI15361.1| 278|Homo sapiens membrane-associated rin... 31 4.4
AL158040-6|CAI13639.1| 278|Homo sapiens membrane-associated rin... 31 4.4
AK000452-1|BAA91173.1| 278|Homo sapiens protein ( Homo sapiens ... 31 4.4
AB191202-1|BAF02285.1| 278|Homo sapiens membrane-associated RIN... 31 4.4
BC103900-1|AAI03901.1| 320|Homo sapiens Bartter syndrome, infan... 30 7.7
BC103899-1|AAI03900.1| 320|Homo sapiens Bartter syndrome, infan... 30 7.7
BC103898-1|AAI03899.1| 320|Homo sapiens Bartter syndrome, infan... 30 7.7
AY034632-1|AAK57750.1| 320|Homo sapiens barttin protein. 30 7.7
AL590440-2|CAH70360.1| 320|Homo sapiens Bartter syndrome, infan... 30 7.7
AL589790-2|CAI17846.1| 320|Homo sapiens Bartter syndrome, infan... 30 7.7
>BC015480-1|AAH15480.1| 278|Homo sapiens membrane-associated ring
finger (C3HC4) 5 protein.
Length = 278
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 ILGGLGLW--FFINLERKCANNLSIYGIAFPGIFCP 135
ILG + W + + L RK +N L I FPGI CP
Sbjct: 154 ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCP 189
>AL161652-2|CAI15361.1| 278|Homo sapiens membrane-associated ring
finger (C3HC4) 5 protein.
Length = 278
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 ILGGLGLW--FFINLERKCANNLSIYGIAFPGIFCP 135
ILG + W + + L RK +N L I FPGI CP
Sbjct: 154 ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCP 189
>AL158040-6|CAI13639.1| 278|Homo sapiens membrane-associated ring
finger (C3HC4) 5 protein.
Length = 278
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 ILGGLGLW--FFINLERKCANNLSIYGIAFPGIFCP 135
ILG + W + + L RK +N L I FPGI CP
Sbjct: 154 ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCP 189
>AK000452-1|BAA91173.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ20445 fis, clone KAT05170. ).
Length = 278
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 ILGGLGLW--FFINLERKCANNLSIYGIAFPGIFCP 135
ILG + W + + L RK +N L I FPGI CP
Sbjct: 154 ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCP 189
>AB191202-1|BAF02285.1| 278|Homo sapiens membrane-associated
RING-CH protein V protein.
Length = 278
Score = 30.7 bits (66), Expect = 4.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 236 ILGGLGLW--FFINLERKCANNLSIYGIAFPGIFCP 135
ILG + W + + L RK +N L I FPGI CP
Sbjct: 154 ILGKMIRWEDYVLRLWRKYSNKLQILNSIFPGIGCP 189
>BC103900-1|AAI03901.1| 320|Homo sapiens Bartter syndrome,
infantile, with sensorineural deafness (Barttin)
protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
>BC103899-1|AAI03900.1| 320|Homo sapiens Bartter syndrome,
infantile, with sensorineural deafness (Barttin)
protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
>BC103898-1|AAI03899.1| 320|Homo sapiens Bartter syndrome,
infantile, with sensorineural deafness (Barttin)
protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
>AY034632-1|AAK57750.1| 320|Homo sapiens barttin protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
>AL590440-2|CAH70360.1| 320|Homo sapiens Bartter syndrome,
infantile, with sensorineural deafness (Barttin)
protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
>AL589790-2|CAI17846.1| 320|Homo sapiens Bartter syndrome,
infantile, with sensorineural deafness (Barttin)
protein.
Length = 320
Score = 29.9 bits (64), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 109 HPYNTFVKKGQKMPGKAIP*MLKLLAHFLSRFMKNHNPKPPRIRL 243
+P TFV G P + LL + L+ MK+ +P+PP +RL
Sbjct: 57 YPKITFVPADSDFQGILSPKAMGLLENGLAAEMKSPSPQPPYVRL 101
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,869,656
Number of Sequences: 237096
Number of extensions: 2033458
Number of successful extensions: 3274
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3274
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -