Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b19
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    24   2.4  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    23   5.6  

>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 10  PTLYGKEIICQIKLRERLTHLKGRIWNDAAYCYPV 114
           P +YG  I    +L++   H  G  + D A  YPV
Sbjct: 52  PAVYGSMIPVAQQLQQHHVHTPGESFADNASGYPV 86


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 28  EIICQIKLRERLTHLKGRIWNDAAYCYPV 114
           E++CQ+ ++E +  +K +  N     +PV
Sbjct: 299 EVVCQLNVKEFVESVKQKQKNQVFLVFPV 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,799
Number of Sequences: 5004
Number of extensions: 3802
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)