Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b19
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907     25   6.5  
05_07_0059 + 27402365-27402733,27402848-27402982,27403070-274031...    25   8.6  
02_05_1117 + 34235295-34235505,34235632-34235713,34236079-342361...    25   8.6  

>08_02_1342 - 26268552-26268783,26270213-26271137,26271680-26272907
          Length = 794

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 12  DPVRQRNHLSN*AEGETNALEG 77
           + +RQR+H+S  A+G  +A++G
Sbjct: 173 ESLRQRSHVSGLADGHAHAIKG 194


>05_07_0059 + 27402365-27402733,27402848-27402982,27403070-27403183,
            27403297-27403449,27403544-27403644,27403945-27404041,
            27404542-27404651,27404775-27404878,27405129-27405308,
            27405398-27405741,27405841-27405905,27405981-27406450,
            27406939-27407793,27408045-27408116,27408475-27408575,
            27409069-27409170,27409295-27409456,27409665-27411230,
            27411384-27411602,27413924-27414198,27414291-27414596,
            27414727-27415012,27415085-27415087,27415162-27415416,
            27415537-27415803
          Length = 2236

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 30   NHLSN*AEGETNALEGSHLERRGLLLP 110
            N+LS   EGETN  E   +   GL+ P
Sbjct: 2207 NYLSKDDEGETNGTEDIAVSSEGLVQP 2233


>02_05_1117 +
           34235295-34235505,34235632-34235713,34236079-34236158,
           34236271-34236311,34236888-34236985,34237514-34237627,
           34238905-34239106
          Length = 275

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 4   TDPTLYGKEIICQIKLRERLT--HLKGRIWNDAAYC 105
           T   +    I+C I +++ ++  HLK  +WN  A C
Sbjct: 31  TSELVMNNHIMCGIGVKKSVSRQHLKAPVWNRLANC 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,638
Number of Sequences: 37544
Number of extensions: 29730
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)