Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23b17
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 75 8e-15
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 69 4e-13
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 57 2e-09
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 56 3e-09
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 36 0.005
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 35 0.011
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 32 0.056
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.40
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.6
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 26 4.9
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 6.4
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha... 25 8.5
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 74.9 bits (176), Expect = 8e-15
Identities = 33/67 (49%), Positives = 48/67 (71%)
Frame = -1
Query: 587 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLS 408
TD +QQTIR+ F T+LT+AHR+NT+MDSDR+LV+ G+V EFD L+ + +S
Sbjct: 1397 TDAIVQQTIRKRFKDRTILTVAHRINTVMDSDRILVLDHGKVVEFDATKKLLENKDSMFY 1456
Query: 407 SMVRETG 387
S+ +E+G
Sbjct: 1457 SLAKESG 1463
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 69.3 bits (162), Expect = 4e-13
Identities = 32/67 (47%), Positives = 46/67 (68%)
Frame = -1
Query: 587 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLS 408
TD +Q+TIR F T+LTIAHR+NT+MDS+R+LV+ G+V EFD L+ + S
Sbjct: 1395 TDAIVQRTIRERFNDRTILTIAHRINTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFY 1454
Query: 407 SMVRETG 387
S+ +E+G
Sbjct: 1455 SLAKESG 1461
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 56.8 bits (131), Expect = 2e-09
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = -1
Query: 584 DNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSS 405
D IQ+T+R AF T+L IAHRL TI+D D+V+V+ G + E+ P +L + N H
Sbjct: 1391 DQKIQKTLREAFGDATMLCIAHRLKTIVDYDKVMVLDKGVLVEYGPPAVLYHN-NGHFRR 1449
Query: 404 MVRETG 387
M +G
Sbjct: 1450 MCDGSG 1455
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 56.4 bits (130), Expect = 3e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -1
Query: 587 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHP 444
TD IQQ +R AF TVL IAHR+ TI+D D+VLV+ +G+ EF P
Sbjct: 1359 TDRRIQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSP 1406
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 587 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 456
++ +Q+ + A T + IAHRL++I D+D + V G +AE
Sbjct: 1293 SEKVVQEALNAASQGRTTVAIAHRLSSIQDADCIFVFDGGVIAE 1336
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/50 (34%), Positives = 31/50 (62%)
Frame = -1
Query: 545 SCTVLTIAHRLNTIMDSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVR 396
S T +TIAH+L TI +D+++V+ G+V E + +S P ++ ++R
Sbjct: 670 SMTTITIAHKLATIRRADQIIVVGDGKVLE-QGSFERLSRPGTNFYKLMR 718
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 32.3 bits (70), Expect = 0.056
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = -1
Query: 575 IQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 456
+++TI+ SCTVL I H+ + + +DR++VM +G V E
Sbjct: 1274 LEKTIQNL--SCTVLIITHQPSLMKLADRIIVMDSGIVKE 1311
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 587 TDNFIQQTIRRAFASCTVLTIAHRLNTIMDSDRVLVMSTGEVAE 456
T N + IR T L I H ++ I + + VLV+ G + +
Sbjct: 605 TKNLVMDAIRAHRKGKTTLVITHDMSQINNDELVLVIDKGHLIQ 648
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 29.5 bits (63), Expect = 0.40
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Frame = +1
Query: 94 FIKNVTKMRVLLRIKWVVVKADAPMITGKCSSMTTRFMXXXXXXXXXQYSWRTDYFVVIT 273
+IKN + VLL+ W V DA GK ++ ++ +YSW DY
Sbjct: 2365 YIKN--ESGVLLKF-WQVNPIDAS--EGKNNTALLKY-HDIPPHSEVKYSW--DYPCCAN 2416
Query: 274 RADVSCVGEIKCLKTILE-ALLWKYASLATSNNFKLFFSPVSRTILER*LLGSDIRMYG* 450
+ C G+ KCL T+ E L + SNN K + L + L+ D Y
Sbjct: 2417 KEIALCYGDQKCLTTLAEIGPLSPFKFTDASNNTKFISRDIVANGLSKILILKD---YDP 2473
Query: 451 SNSATSPVLITRTRSE 498
S + P + ++ +E
Sbjct: 2474 SKAVRKPKIYSKVSTE 2489
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 27.5 bits (58), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 138 MGCCKGGCTNDNWEVFIDD 194
+ CC+ GC W+V+ DD
Sbjct: 62 LNCCQSGCAICVWDVYADD 80
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -2
Query: 352 KMRISKVMLQVSFLSILFHQHK 287
+M + K + +SF+S+LF++HK
Sbjct: 582 EMGLGKTVQVISFISVLFYRHK 603
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 299 SPTQETS--ARVMTTK*SVRQEYCYYDKPDNKPMNLV 195
SPT+E S V TT S +Q + PDNKP ++V
Sbjct: 326 SPTKEKSQWGSVSTTGVSNQQNHPAAWNPDNKPQSIV 362
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 244 WRTDYFVVITRADVSCVGEIKCLKTILEALL 336
W Y + R DV V E+K +++ILE L+
Sbjct: 138 WPVSYRKHVQRQDVFTVHELKRIESILEDLI 168
>SPCC1322.14c |vtc4||vacuolar transporter chaperone
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 299 SPTQETSARVMTTK*SVRQEYCYYDKPDNKPMNLVVIDEHFPVII 165
SP + SA T + VRQ Y+ P+N + I +H PV++
Sbjct: 177 SPIKGDSAAGGTQQNFVRQTTKYWVHPNNVTELKIYILKHLPVLV 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,006
Number of Sequences: 5004
Number of extensions: 51823
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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