Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b17
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 451 SNSATSPVLITRTRSESMIVFKRCAIVNTVHEAKAR 558
           S + TSP+  T++      +   C++ N+ H+ K R
Sbjct: 326 STTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLR 361


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -1

Query: 500 DSDRVLVMSTGEVAEFDHPYILMSDPNSHLSSMVRETGEKNSLKLFE 360
           D D +L +   E + ++H  + + +    L    RE  + +  +LFE
Sbjct: 266 DDDLILTLGKKEFSHYEHQNVFVKNSGQWLREYDRELEDFDG-RLFE 311


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 445 G*SNSATSPVLITRTRSESMIVFKR 519
           G SNSA +P++ +   +E    FKR
Sbjct: 314 GYSNSAFNPIIYSIFNTEFREAFKR 338


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 323 LKHYFGNTHLWQLQITLSYSSRPFLVPY*KGDYWD 427
           L + F N+  W++   L Y   P+     KGD +D
Sbjct: 209 LVYDFRNSRSWRITNNLFYPYPPYGTFNIKGDTFD 243


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 262 VVITRADVSCVGEIKCLKTIL 324
           ++  RAD S VG++  L+ +L
Sbjct: 35  IIWVRADGSAVGDVPGLRQVL 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,856
Number of Sequences: 438
Number of extensions: 3313
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)