Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23b10
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 58 2e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 50 5e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 41 2e-04
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 40 5e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 38 0.002
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 37 0.004
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.004
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 36 0.009
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.012
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 35 0.015
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 35 0.015
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 33 0.062
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.14
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.14
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 31 0.19
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 31 0.25
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.44
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.44
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 29 0.58
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 29 0.58
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 29 1.0
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 28 1.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 28 1.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 28 1.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 28 1.8
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 2.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.1
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 5.4
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 26 7.1
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 25 9.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 9.4
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 9.4
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 9.4
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/105 (26%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 272 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSS-IEENKTFAFITLSASNYDIESCI 448
R++V + + +L FS+FG V++L++ KS+ + + FA++ + C
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 449 KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 583
++ FKGS+L + AR +L +LQ+E+ A + T ++++E
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNNDEKNE 110
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 49.6 bits (113), Expect = 5e-07
Identities = 32/128 (25%), Positives = 65/128 (50%)
Frame = +2
Query: 269 TRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 448
T +++ N+ E E F +FG++ SL L K ++ + F F+ A++ + +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSL-VKDQNDKPRGFGFVNY-ANHECAQKAV 318
Query: 449 KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPIINLSEKL 628
+E+KG +LYV RA++ ER + R ++ + EK +++ + I NL +++
Sbjct: 319 DELNDKEYKGKKLYVGRAQKKH-EREEELRKRYEQMKLEKMNKYQGV--NLFIKNLQDEV 375
Query: 629 NPRKRKFE 652
+ + K E
Sbjct: 376 DDERLKAE 383
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/82 (35%), Positives = 42/82 (51%)
Frame = +2
Query: 266 GTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESC 445
G LFVS I EDEL+ FSKFG V + + + + ++ F F++ S + S
Sbjct: 100 GNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE-EATSA 158
Query: 446 IKCFTSEEFKGSRLYVTRARES 511
I S+EF G L V +A+ S
Sbjct: 159 IDNLNSQEFYGRVLNVQKAKRS 180
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 41.1 bits (92), Expect = 2e-04
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Frame = +2
Query: 257 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDI 436
M+ + LFV N+ T +D+L FS G + + EN+ + F+T S D
Sbjct: 1 MNSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE-DA 59
Query: 437 ESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP-IIN 613
+ K +++ G L + A + ++N+A +K ++ + I P I
Sbjct: 60 QRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIK 119
Query: 614 LSEKLNPRKRKF 649
+ L P KF
Sbjct: 120 KPQHLEPHFSKF 131
Score = 29.5 bits (63), Expect = 0.58
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Frame = +2
Query: 272 RLFVSNIPENTNEDE-LRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 448
RL + N+P + + + L FSKFGKV + + K FAF+ + E +
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGG-GRMCGFAFVWMK-DRKAAEEAM 165
Query: 449 KCFTSEEFKGSRLYVTRA--RESF-LERLQRERNEAQRKETEKEQQHETI 589
E G + V A +++F L+ +E + KE ++ H +
Sbjct: 166 NSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIV 215
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 39.5 bits (88), Expect = 5e-04
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 275 LFVSNIPENT--NEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 448
LFV N+ +N N +L FSKFG++ S L S E +K + F++ S ++ I
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS-HPFEAVQAI 479
Query: 449 KCFTSEEFKGSRLYVTRA--RESFLERL 526
F RL+V A RE +RL
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRL 507
Score = 33.5 bits (73), Expect = 0.036
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDL----KCKSSIEENKT-FAFITLSASNYDIE 439
++V N+P +L F FG + + K KS+ ++ T FAFIT + +
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFE-NKCSAD 80
Query: 440 SCIKCFTSEEFKGSRLYV--TRARESFLERLQRERNEAQRKETEK 568
+ I F+G+ L V T E + +L+ ++ EK
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEK 125
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.9 bits (84), Expect = 0.002
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +2
Query: 257 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDI 436
+S RLF+ N+ + ED+L+ F FG++ + + K FA+I ++ +
Sbjct: 319 ISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAV 378
Query: 437 ESCIKCFTSEEFKGSRLYV--TRARESFL 517
+ ++ ++ F+G L+V +AR S L
Sbjct: 379 RAYLE-LDAKPFQGRLLHVLPAKARSSIL 406
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSL 358
L V N P T+ +EL FS FG++ +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRI 535
Score = 26.6 bits (56), Expect = 4.1
Identities = 21/118 (17%), Positives = 48/118 (40%)
Frame = +2
Query: 254 SMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYD 433
S GT++ + N+P + +++ +G++ S+ + K + FAF + +
Sbjct: 716 SKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDRSARGFAFAEFVTAR-E 773
Query: 434 IESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNPI 607
+ ++ + G L + A + ++ +Q E KE E +I + I
Sbjct: 774 AANAMRALKNTHLLGRHLVLQYASNATMDDMQ-HAIEKMAKEANAEAAAPSITGKRLI 830
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 37.9 bits (84), Expect = 0.002
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Frame = +2
Query: 251 LSMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI------T 412
L P T++FVSNI ++LR F FG+V LDLK + I +
Sbjct: 88 LGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSS 147
Query: 413 LSASNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIP 592
+S + + + ++ F G L V R+ L E + EK+ Q ET+
Sbjct: 148 ISVAAHSAKIAVQQANGLRFSGKPLSVVLDRDG---SLCEEAFKKALNAVEKQFQEETLQ 204
Query: 593 NQ 598
Q
Sbjct: 205 KQ 206
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 36.7 bits (81), Expect = 0.004
Identities = 28/89 (31%), Positives = 42/89 (47%)
Frame = +2
Query: 269 TRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCI 448
TRLFV IP +++ F +G++ LD K + F F+ + + D +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQI--LDCKLMNG------FGFVEVEDAR-DARDIV 54
Query: 449 KCFTSEEFKGSRLYVTRARESFLERLQRE 535
F +EF GSR+ V AR ER +RE
Sbjct: 55 NDFQGKEFMGSRIVVEPARG---ERRRRE 80
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +2
Query: 260 SPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 409
S +++ N+ + NED++ C FS+FG+ ++L ++K FAF+
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFL 77
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 35.5 bits (78), Expect = 0.009
Identities = 27/111 (24%), Positives = 49/111 (44%)
Frame = +2
Query: 272 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 451
++FV +P + E+E R F++FG+V L + F F+T Y+ ES ++
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVT-----YENESAVE 302
Query: 452 CFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP 604
S+ Y+T + ++R +A +++ QH N NP
Sbjct: 303 ATMSQP------YITIHGKPV--EVKRATPKASLRDSHDRHQHGYHGNANP 345
Score = 29.9 bits (64), Expect = 0.44
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 272 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFIT 412
++F+ + T +D LR F +FG+V + S+ ++ F F+T
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLT 210
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 35.1 bits (77), Expect = 0.012
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIKC 454
LFV N+P++++ + L+ F + G+V S+ + + K +AF+ D+ S
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 455 FTSEEFKGSRLYV---------TRARESFLERLQRERNEAQRKETEKEQQ 577
F +K ++ + T AR + ++ R+ E R+ E+Q
Sbjct: 154 FHHTIYKERKINIELTAGGGGKTEARMNKIKEKNRKWKEEMRQRVASEEQ 203
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 382
+F+ N+P + +E E+ AF KFGK+ + + K +I
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNI 336
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 34.7 bits (76), Expect = 0.015
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 451
L V+N+ ++T E+ELR F +FG + + L K FAF+ S YD + IK
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFV----SYYDRDCAIK 258
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.7 bits (71), Expect = 0.062
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Frame = +2
Query: 236 Q*NCKLSMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKT----FA 403
Q N + R+FV + +T + E+R F G V + + + + A
Sbjct: 33 QSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIA 92
Query: 404 FITLSASNYDIESCIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 583
F+T + + D++ I+ + + V +AR E+ ++R +++ K E+ +
Sbjct: 93 FVTFN-NQEDVDKAIETLNGKTLDDREIVVQKAR-PVQEQPIKDRKKSKNKNGEEPETST 150
Query: 584 TIPN 595
++ N
Sbjct: 151 SVEN 154
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/107 (20%), Positives = 44/107 (41%)
Frame = +2
Query: 263 PGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 442
P LFV + T +++L FS+FGK+ S + ++ +AFI + +E
Sbjct: 242 PENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFD-NKESVEK 300
Query: 443 CIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHE 583
+ SR++V ++ R N +++ + + E
Sbjct: 301 AYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSNRDRKRSSSRSDDRE 347
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +2
Query: 269 TRLFVSNIPE-NTNEDELRCAFSKFGKVNSLDL 364
T L V NIPE + NE+ +R FSKFG + ++L
Sbjct: 242 TALEVRNIPEEHFNEENIRSFFSKFGVLEKVEL 274
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 31.1 bits (67), Expect = 0.19
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 518 ERLQRERN----EAQRKETEKEQQHETIPNQNPIINLSEKLNPRKRK 646
E L++E N EA++ +E+EQ + ++PI++ ++K +K+K
Sbjct: 56 EILEKENNAINSEAEKSVSEEEQDEPLVEGESPIVSTNKKAKNKKKK 102
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFI 409
L+V +P E ++R FS+FG V L + +K +AFI
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.44
Identities = 18/73 (24%), Positives = 34/73 (46%)
Frame = +2
Query: 272 RLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIESCIK 451
++++SN+P N ED++ FG + S L + +K F F + D E I
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPS-DAEVAIS 369
Query: 452 CFTSEEFKGSRLY 490
++ G++L+
Sbjct: 370 GLDGKDTYGNKLH 382
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.44
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 442
LF+SNI +E++++ F ++ +++ L+C + + AFI L A+ DI++
Sbjct: 75 LFISNIDPEVSENDIKYLFQRYNFISARVLRCVDG--TSTSIAFIWL-ANESDIQN 127
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 269 TRLFVSNIPENTNEDELRCAFSKFGKV 349
T ++V +PEN ELR F FG++
Sbjct: 176 TAVYVHQLPENITTQELRSYFLHFGEI 202
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Frame = +2
Query: 455 FTSEEFKGSRLYVTRARESFLE---RLQRERNEAQRKETE--KEQQHETIP-NQNPIINL 616
F++ S YV RA ESF + RNE R+ T Q T P +NP +
Sbjct: 278 FSASPIDPSMSYVYRAPESFSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPELRT 337
Query: 617 SEKLNPRKRKFE 652
S KL RKR+ E
Sbjct: 338 SHKLAERKRRKE 349
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.5 bits (63), Expect = 0.58
Identities = 24/92 (26%), Positives = 43/92 (46%)
Frame = +2
Query: 254 SMSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYD 433
S S +++ +P NT+++ L ++FGKV+S K + F A +
Sbjct: 291 STSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF----ACFEE 346
Query: 434 IESCIKCFTSEEFKGSRLYVTRARESFLERLQ 529
+S + C ++ G + + A+ESF RLQ
Sbjct: 347 EKSALICISAMTLCGYQ--CSFAKESFSARLQ 376
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +2
Query: 488 YVTRARESFLERLQRERNEAQRKETEKEQQHETIP 592
Y R E+FL R+QR R E+ +E EK+++ +IP
Sbjct: 62 YRVRESEAFLIRMQR-RLESAEEEFEKQRRASSIP 95
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +2
Query: 482 RLYVTRARESFLERLQRERNEAQRK------ETEKEQQHETIPNQNPIINLSEKLNPRKR 643
R ++ R+ ++F L +E QR+ E+ E QN +L E R+R
Sbjct: 609 RSFLRRSYDTFQRNLHEPDDERQREPTLGHIESSIENHRPRYSRQNSESHLRENSVERRR 668
Query: 644 KFESXVVNPYSDTEQQHETIPHP 712
+ + V+ D+E + + IP P
Sbjct: 669 REQ--VLTNIGDSESEDDNIPRP 689
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 464 EEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETI 589
++ + R R R+ ERL+RE+ QR++ +K ++ E I
Sbjct: 78 KKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKI 119
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 1.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 263 PGTRLFVSNIPENTNEDELRCAFS 334
P ++V N+P +T+E+EL+ FS
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFS 447
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 357 KLFTLPNLENAHRNSSSFVFSGIL 286
KL+ LP++E A S +FSGIL
Sbjct: 275 KLYLLPSIEKALLRSPEIIFSGIL 298
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +2
Query: 275 LFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSI 382
+F+ N+P EDE+R FG ++ + + + +I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNI 243
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.5 bits (58), Expect = 2.3
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Frame = +2
Query: 359 DLKCKSSIEENKTFAFITLSASNYDIESCIKCFTSEEFKGSRLYV-TRARESFLERLQRE 535
DLK K + + A + L+ SN + F E K LY + L
Sbjct: 276 DLKLKDDTFNDYSSASMELNTSNLRARASFSNFMENEKK---LYEKVNTNRTLLRNANLT 332
Query: 536 RNEAQRKETEKEQQHETIPNQNPIINLSEKL 628
NEAQ+ ++ P+ N + +L EK+
Sbjct: 333 LNEAQQSVKSLTERQGPRPSDNGVQDLQEKM 363
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/42 (26%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 275 LFVSN-IPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKT 397
L SN IPEN + +RC F ++++++ + +++ +T
Sbjct: 477 LSTSNVIPENNRQQFIRCVFHNIMQIHAVNSRLSNALNRTQT 518
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 257 MSPGTRLFVSNIPENTNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAF 406
M+P ++V NIP E+++ F + G V S L + K + F
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGF 50
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 494 TRARESFLERLQRERNEAQRKETEKEQQHETIPNQNP 604
T R F+E ++R+R Q+++ + +QQ + Q+P
Sbjct: 286 TFQRLQFIENVRRKRAILQQRQMQMQQQQKAQQQQSP 322
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 428 YDIESCIKCFTSEEFKGSRLYVTRARESFLE 520
Y + SC+ F S KGS +YV +E ++
Sbjct: 73 YFLASCLLTFWSSVVKGSTVYVATKKERHIK 103
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 416 SASNYDIESCI---KCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKE 559
S SNY + C + + + TR +E LER ++ RN+ K+
Sbjct: 206 SRSNYPESTAFCEANCPSGNDASNKEFFETRRKEFQLERREQNRNQKSSKQ 256
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.4
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Frame = +2
Query: 269 TRLFVSNIPEN--TNEDELRCAFSKFGKVNSLDLKCKSSIEENKTFAFITLSASNYDIES 442
+ L+V N+ + T + +L FS FG + S L C + +K + F+ IE+
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFR----QIEA 437
Query: 443 CIKCFTSEEFKGSRLYVTRARESFLERLQRERNEAQRKETEKEQQHETIPNQN 601
++ + G + R F ER Q K +T N
Sbjct: 438 AVR--AKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTSEQTAQQDN 488
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 272 RLFVSNIPENTNEDELRCAFSKF 340
RLFV N+ + N++ L AFS++
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEY 53
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +2
Query: 476 GSRLYVTRARESFLERLQRERNEAQR-KETEKEQQHETIPNQNPIINLSEKLNPRKRKFE 652
G R+ + R+ L+ R+ K++ E ++N NL + +KRKF+
Sbjct: 483 GGRVSSSSFRDKILQTNFSPRSTIDSFSNISKKRNSEEANDENDETNLKIPIPEKKRKFQ 542
Query: 653 SXVVNP---YSDTEQQHETI 703
+ + S TE HE +
Sbjct: 543 EVLQSKNILVSSTEDSHEPV 562
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,879
Number of Sequences: 5004
Number of extensions: 48310
Number of successful extensions: 217
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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