Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b08
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    97   3e-21
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    92   8e-20
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    48   2e-06
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    33   0.055
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    28   1.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.6  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 52/146 (35%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
 Frame = +1

Query: 217 LAASRRIVGAVVRTPCTRAHM-SERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK 393
           L  +  +   +  TP T+  + SE  G+ +Y K+E L    SFK RG  N + SL  +  
Sbjct: 101 LTLTSNVYEVIKETPLTKGVVISESTGVPVYLKREDLTPVFSFKIRGAHNKMASLDKQSL 160

Query: 394 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGIDMSAA 573
           KNGVIA S GNH   ++Y +  LG+   +V+P +T   K    ++LGA V  HG +   A
Sbjct: 161 KNGVIACSAGNHAQGVAYSARTLGVKATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIA 220

Query: 574 KLHAMSLGKEKKMIYINGYDHPDVLA 651
           K     L KE+ +  I+ +D P V+A
Sbjct: 221 KAECARLAKEQNLEVIHPFDDPYVIA 246


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 1/174 (0%)
 Frame = +1

Query: 205 YDDILAASRRIVGAVVRTPC-TRAHMSERLGMDIYFKQEFLQYTGSFKERGVRNALISLS 381
           YDD+ +AS RI     +TP  T + +++    +++FK E  Q  G+FK RG  NAL  L+
Sbjct: 10  YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69

Query: 382 DEQKKNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKVFKHGID 561
           + Q+K GV+  S+GNH  A++  +  LGIP  +++P+     KV   +  G +V  +   
Sbjct: 70  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129

Query: 562 MSAAKLHAMSLGKEKKMIYINGYDHPDVLAXXXXXXXXXXXXLPNVDAVLIPVG 723
               +  A  + + + +  I  YDHP VLA            +  +DA+ + +G
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLG 183


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
 Frame = +1

Query: 238 VGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK--KNGVI 408
           +GA+ RTP  R + +S   G +I  K EF    GS K+R     +     + K  + G I
Sbjct: 18  IGAIGRTPLIRLNTLSNETGCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTI 77

Query: 409 AAST-GNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 543
              T GN G  L++ +   G  C++ +P   +  K++  + LGA+V
Sbjct: 78  VEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTLKFLGAEV 123


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = +1

Query: 235 IVGAVVRTPCTRAH-MSERLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQ------K 393
           + G +  T   R   +S+  G DI  K EFL    S K+R V   +I  ++E       +
Sbjct: 46  VEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDR-VALQMIRTAEENGDLVPYQ 104

Query: 394 KNGVIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKV 543
            N V   + G+ G +++     LG    + +P   +  K +  E LGA V
Sbjct: 105 SNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHV 154


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 226 SRRIVGAVVRTPCTRAHMSERLGMDIYFKQEFLQYTGSFKE-RGVRNALIS 375
           +R I G V+R     + + ++   D +FK +F +  G F++ R V   LIS
Sbjct: 265 NRAIEGFVIRCHSDHSSLEQQSSNDFFFKYKFPEPYGMFRQWREVTKMLIS 315


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 596 PKLIACNLAADMSIPCLKTFAPSCSHLLTLL 504
           PK  +C+L+ D+    L+T  PSC     LL
Sbjct: 318 PKNSSCSLSVDVKATLLETTPPSCEVSYNLL 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,754
Number of Sequences: 5004
Number of extensions: 63021
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)