Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b08
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    45   8e-07
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 44.8 bits (101), Expect = 8e-07
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
 Frame = +1

Query: 184 NNPR--KIKYDDILAASRRIVGAVVRTPCTRAH---MSERLGMDIYFKQEFLQYTGSFKE 348
           N+P   + K  D       I+ A+ +TP  + +    S  +  +IY K EFL   GS K+
Sbjct: 20  NSPHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKD 79

Query: 349 RGVRNALISLSDEQK-KNG--VIAASTGNHGAALSYHSTQLGIPCIVVVPIHTALNKVNK 519
           R     +    D+   K G  +I  ++GN G  L+  +   G  CI+V+P   +  K++ 
Sbjct: 80  RIAYRMIQDAEDKGLLKPGCTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKIST 139

Query: 520 CEQLGAKVFKHGIDMS--AAKLH---AMSLGKE-KKMIYINGYDHP 639
              LGAK+ +   + S  + + H   A  L KE    I ++ Y +P
Sbjct: 140 LYALGAKIIRTPTEASWHSPEAHISVAQKLQKEIPNSIILDQYTNP 185


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 181 PNNPRKIKYDDI 216
           P N +++KYDDI
Sbjct: 339 PKNNKELKYDDI 350


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 36  ETHCYDDIESVV 1
           E HCY DIE  V
Sbjct: 244 EAHCYFDIEPTV 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,738
Number of Sequences: 438
Number of extensions: 4557
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)