Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b06
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos...    27   2.6  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    27   3.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   7.9  

>SPBC8D2.01 |gsk31||serine/threonine protein kinase
           Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
 Frame = -3

Query: 435 VRPRRILPNYRPFLLVI-----RRVATPAE-RI*YHTSAYRSRMILTF-SLFVNIRIDVW 277
           ++P+ +L +Y+  +L +      +V  P+E  + Y  S Y     L F +     +IDVW
Sbjct: 151 IKPQNLLVDYKTGILKLCDFGSAKVLVPSEPNVSYICSRYYRAPELVFGATHYTTKIDVW 210

Query: 276 SRELVIREI 250
           S   VI E+
Sbjct: 211 SAACVIAEL 219


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 632 GLTRYP-YYQ*SIFDLRHW 685
           GL  YP YYQ S F++R+W
Sbjct: 256 GLKNYPEYYQLSSFEVRYW 274


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 609 ITQIIILRVSFLLHDVIHSPWKSIVNI 529
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 127 LDDGVEFNGISRGTLLKILFDYQDEIQS 210
           +DDG+E+   S+  L K+L  Y+ ++++
Sbjct: 480 IDDGLEYVSSSQQELFKLLDSYETQLET 507


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 417  LPNYRPFLLVIRRVATPAERI*YHTSAYRSRMILT 313
            L  Y PFL V   V  PAER    +   +S +++T
Sbjct: 1437 LSTYAPFLKVSAYVGPPAERAKIRSKMKKSDVVVT 1471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,090
Number of Sequences: 5004
Number of extensions: 56402
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)