Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b06
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    32   0.45 
AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical ...    30   1.4  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
 Frame = +1

Query: 100 NLVGIQPVLLDDGVEFNGISRGTLLKILFDYQDEIQSRNIMKNTQTLFM-------ADFA 258
           N +G+Q  LL   + F+     T L+ +F+ + + Q +++MK     F+           
Sbjct: 186 NDIGLQTTLLHTFLSFHPAWLKTALEAIFNTRIDAQPKHLMKKLSQFFLDLVFSNPTMLK 245

Query: 259 NNKFTRPHIYPDVYKKRKS*DHARTISRSMVLYALGRSGHT 381
           N KF +    P + +  K   H   +S SM L  L  + HT
Sbjct: 246 NKKFAQGSGKPIITEAGKEALHKHFLSVSMKLMFLIETAHT 286


>AF045641-5|AAC02577.2|  554|Caenorhabditis elegans Hypothetical
           protein F53H1.3 protein.
          Length = 554

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 240 QSLCVLHDVSALDFILVIEENFQKCPA*NSVELNAIIQQYRLNTN 106
           Q+L   H+V  +D +L I E   +CP    +  N + Q  ++ +N
Sbjct: 490 QTLATKHNVEIVDLVLRIRERIIECPPDTEIRRNLVRQVVKILSN 534


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 443 TSDAFVL--SDAPVFESQAGINFSNEIQTKQIFTIDFH 550
           TSDA +L  ++A +   Q      NE  T+Q+FT+D++
Sbjct: 23  TSDAEILEITNAHIKAIQVATRSMNETATRQLFTLDYN 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,366,524
Number of Sequences: 27780
Number of extensions: 312677
Number of successful extensions: 826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)