Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23b02
(214 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 111 2e-26
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 60 5e-11
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 56 8e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 54 3e-09
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 0.59
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 0.78
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 1.8
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 24 2.4
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ... 23 4.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 4.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 23 4.2
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 23 5.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 23 5.5
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 22 9.6
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ... 22 9.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 22 9.6
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 22 9.6
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 22 9.6
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 111 bits (266), Expect = 2e-26
Identities = 47/70 (67%), Positives = 58/70 (82%)
Frame = +2
Query: 2 HGIDPSGCYHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRP 181
HG+D +G YHG S+ Q ER+NVY+NEA+ GKYVPR VL+DL+P TMDAV+SG FG LFRP
Sbjct: 28 HGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRP 87
Query: 182 DNFVYGQNCA 211
DN +YGQ+ A
Sbjct: 88 DNIIYGQSGA 97
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 59.7 bits (138), Expect = 5e-11
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 HGIDPSGCYHGDSDLQLER--INVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLF 175
HGI P+G + ++ Q + +++E GKYVPR++ +DL+P +D VR+GP+ LF
Sbjct: 28 HGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLF 87
Query: 176 RPDNFVYGQNCAA 214
P+ + G+ A+
Sbjct: 88 HPEQLITGKEDAS 100
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 55.6 bits (128), Expect = 8e-10
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +2
Query: 2 HGIDPSGC------YHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPF 163
HGI P G H ++ + +++E GK+VPR++ +DL+P +D VR+GP+
Sbjct: 28 HGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPY 87
Query: 164 GCLFRPDNFVYGQNCAA 214
LF P+ V G+ A+
Sbjct: 88 KDLFHPEQMVTGKEDAS 104
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 53.6 bits (123), Expect = 3e-09
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +2
Query: 2 HGIDPSGCYHGDSDLQLERINVYYNEASAGKYVPRTVLIDLKPATMDAVRSGPFGCLFRP 181
HGI P G + ++R +V++ ++ +Y+PR +LIDL+P ++ + S +G L+ P
Sbjct: 29 HGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNP 88
Query: 182 DNFVYGQN 205
+N + +N
Sbjct: 89 ENILITKN 96
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 0.59
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 31 RRLRPATRKDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVG-TLRMPIQT 180
R+ +P +R+D R+ + +G E C H D G++ L++P +T
Sbjct: 219 RKNQPRSRRDPRLSWKALGGEYCHFHLYKENRDSMDCLGKIARLLKVPTRT 269
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 0.78
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 31 RRLRPATR-KDQRVLQRGIGWEICSSHGSYRLEAGHDGRGEVGTLR 165
R RP + KD + Q+GI S G+Y L G D V LR
Sbjct: 283 RTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLR 328
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 155 GPFGCLFRPDNFVYGQN 205
GP+G +F P F++ N
Sbjct: 157 GPYGTMFLPQQFIFDSN 173
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 24.2 bits (50), Expect = 2.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 142 VHRGRLQVDKNRARNIFPS 86
+ R L + K ARN FPS
Sbjct: 1473 ISRSNLDIQKEAARNFFPS 1491
>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 4 RHRSKRML---PRRLRPATRKDQRVLQRGIGWEICSS 105
RH + +L P++L ++QR+LQR CS+
Sbjct: 29 RHNATILLQSSPKKLSKEEIREQRLLQRAYALRACSN 65
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.4 bits (48), Expect = 4.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 14 PSGCYHG--DSDLQLERINVYYNEASAGKYVPRTVL 115
PSG S L +E I+ Y A KY+PR+ +
Sbjct: 625 PSGVSESAASSFLDIENIDEYLESAENMKYLPRSTV 660
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 56 RINVYYNEASAGKYVPRTVLIDLKPATM 139
++NV+ N+ G+Y +T++ LK + +
Sbjct: 636 KLNVHCNDIIPGRYHLKTIVFKLKDSVL 663
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 12 IQADATTATPTCNSKGS 62
I+A ATT++PT N+ S
Sbjct: 232 IEAPATTSSPTSNTSSS 248
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 62 NVYYNEASAGKYVPRTVLIDLKPATMDAVR 151
N YY + P+T+L D+K D R
Sbjct: 160 NQYYQSRNVFFVTPQTILNDIKHGICDRTR 189
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +3
Query: 150 GRDPSDAYSDRTISSTDKTVR 212
GR PS+ YS++ + S+ +R
Sbjct: 179 GRPPSEIYSEQKMKSSGSKLR 199
>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 268
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 65 VYYNEASAGKYVPRT 109
++YN+ AGKY T
Sbjct: 12 IFYNDVEAGKYSTNT 26
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 66 TLILSSCRSESPW*HPLGS 10
T++LSS R +S W H G+
Sbjct: 372 TVLLSSARGKSIWGHMKGN 390
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 39 PTCNSKGSTCTTTRHRL 89
P C+S TCT R R+
Sbjct: 69 PVCSSCAHTCTACRMRI 85
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 22.2 bits (45), Expect = 9.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 58 DQRVLQRGIGWEICSSHGS 114
D +L G GWE SSH S
Sbjct: 294 DWMLLNDGKGWESSSSHFS 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 903,945
Number of Sequences: 5004
Number of extensions: 14959
Number of successful extensions: 49
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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