Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b01
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0897 - 6903294-6903401,6903781-6903855,6904239-6904379,690...    36   0.010
10_08_0724 + 20114796-20115506                                         31   0.39 
01_07_0184 + 41846416-41847132                                         28   3.7  
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     28   3.7  
03_02_0591 - 9682476-9682487,9682805-9682885,9683085-9683192,968...    27   4.9  
02_01_0404 - 2945611-2948802                                           27   6.4  
03_02_0592 - 9687700-9687933,9688515-9688591,9688891-9688999,968...    27   8.5  

>06_01_0897 -
           6903294-6903401,6903781-6903855,6904239-6904379,
           6904496-6904646,6905035-6905178,6905276-6905366,
           6906071-6906308
          Length = 315

 Score = 36.3 bits (80), Expect = 0.010
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = +1

Query: 292 CPYAERTVLTLNAKNIPYDLVFIKFRSET*MDLQL*PEG 408
           CP+ +R +LT+  K++PYD+  +   ++    L++ PEG
Sbjct: 80  CPFTQRVLLTIEEKHLPYDIKLVDLANKPDWFLKISPEG 118



 Score = 27.9 bits (59), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 356 LSNLDQKPEWIFNFSPKGTVPXLE 427
           L +L  KP+W    SP+G VP ++
Sbjct: 101 LVDLANKPDWFLKISPEGKVPIVK 124


>10_08_0724 + 20114796-20115506
          Length = 236

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 259 SGKLRVFAMRFCPYAERTVLTLNAKNIPYDLV 354
           SG+L++  +   PYA R  + LN K++PY+ V
Sbjct: 4   SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYV 35


>01_07_0184 + 41846416-41847132
          Length = 238

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 253 PYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFIKFRSET 378
           P    ++V      PY++R    L  K +PY+L+    R+++
Sbjct: 4   PAPAPVKVIGTFDSPYSQRAEAALRLKGVPYELILEDLRNKS 45


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 265 KLRVFAMRFCPYAERTVLTLNAKNIPYDLVFIKFRS 372
           KLRV+ M       R    LN K + +DLV +  R+
Sbjct: 7   KLRVYGMALSANVVRVATVLNEKGLDFDLVPVDLRT 42


>03_02_0591 -
           9682476-9682487,9682805-9682885,9683085-9683192,
           9683307-9683383,9683495-9683603,9683696-9683794,
           9684208-9684294,9684454-9684514,9684646-9684720,
           9684826-9684854
          Length = 245

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 250 PPYSGKLRVFAMRFCPYAERTVLTLNAKNI 339
           P + G  R++    CPYA+R  +  N K +
Sbjct: 28  PLFDGTTRLYVAYHCPYAQRAWIARNYKGL 57


>02_01_0404 - 2945611-2948802
          Length = 1063

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 300 VRTKSHSKNAKFSTIWGQNISGL*MLL 220
           + TKSH+K A F+T +G    G+ +LL
Sbjct: 688 ISTKSHNKKAIFATAFGVFFGGIAVLL 714


>03_02_0592 -
           9687700-9687933,9688515-9688591,9688891-9688999,
           9689162-9689260,9689368-9689454,9689570-9689630,
           9689739-9689813,9689936-9689961
          Length = 255

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +1

Query: 250 PP--YSGKLRVFAMRFCPYAERTVLTLNAKNI 339
           PP  + G  R++   FCP+A+R  +  N K +
Sbjct: 25  PPRLFDGTTRLYICYFCPFAQRAWIIRNFKGL 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,433,015
Number of Sequences: 37544
Number of extensions: 157090
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)