Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23b01
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    47   5e-06
L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical p...    46   9e-06
AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical ...    45   3e-05
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    44   5e-05
L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical pr...    43   8e-05
L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical pr...    43   8e-05
L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical pr...    28   2.5  

>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 229 LQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIPYDLV 354
           L  G + PP + G  R+++MRFCPYA+R ++ L  KNIP ++V
Sbjct: 85  LHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIPVEVV 127


>L23651-11|AAA27959.1|  250|Caenorhabditis elegans Hypothetical
           protein C29E4.7 protein.
          Length = 250

 Score = 46.4 bits (105), Expect = 9e-06
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 214 MSEKHLQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIPYDLV 354
           ++ K ++ GD  PP S G  RV+ MRFCP+AER +L + AK I  ++V
Sbjct: 6   VTSKAIRKGDAEPPLSKGSFRVYNMRFCPWAERAMLYVAAKGIEAEVV 53


>AF025462-4|AAN72424.1|  123|Caenorhabditis elegans Hypothetical
           protein K10F12.4b protein.
          Length = 123

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 229 LQTGDVLPPYS-GKLRVFAMRFCPYAERTVLTLNAKNIP 342
           L  G + PP + G  R+++MRFCPYA+R ++ L  KNIP
Sbjct: 85  LHPGSIEPPLTPGNYRLYSMRFCPYAQRVLIYLAKKNIP 123


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 19/56 (33%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = +1

Query: 214 MSEKHLQTGDVLPPYSGK--LRVFAMRFCPYAERTVLTLNAKNIPYDLVFIKFRSE 375
           ++ K L+TGD+ PP       R+++MRFCP A+R ++  + K IP +++ I  + +
Sbjct: 7   INSKALKTGDLPPPSPSPNTFRIYSMRFCPAAQRALIYASVKKIPSEVININLQQK 62



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 NLDQKPEWIFNFSPKGTVPXLE 427
           NL QKP+W F  + KG VP LE
Sbjct: 58  NLQQKPDWYFTKNYKGQVPTLE 79


>L16622-3|ABC71837.1|  254|Caenorhabditis elegans Hypothetical
           protein C02D5.3c protein.
          Length = 254

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +1

Query: 214 MSEKHLQTGDVLP--PYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFI 360
           ++ K ++ GD  P  P SG +R++ MR+CP+A+R ++  + K IP +++ I
Sbjct: 7   LNTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINI 57



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 NLDQKPEWIFNFSPKGTVPXLE 427
           +LDQKP+W F    KG VP LE
Sbjct: 58  HLDQKPDWFFTKHYKGQVPALE 79


>L16622-1|ABB51198.1|  537|Caenorhabditis elegans Hypothetical
           protein C02D5.3a protein.
          Length = 537

 Score = 43.2 bits (97), Expect = 8e-05
 Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
 Frame = +1

Query: 214 MSEKHLQTGDVLP--PYSGKLRVFAMRFCPYAERTVLTLNAKNIPYDLVFI 360
           ++ K ++ GD  P  P SG +R++ MR+CP+A+R ++  + K IP +++ I
Sbjct: 290 LNTKVVKNGDPAPAPPASGTIRIYNMRYCPWAQRALIFASLKKIPTEVINI 340



 Score = 31.9 bits (69), Expect = 0.20
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 NLDQKPEWIFNFSPKGTVPXLE 427
           +LDQKP+W F    KG VP LE
Sbjct: 341 HLDQKPDWFFTKHYKGQVPALE 362



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 NLDQKPEWIFNFSPKGTVPXLE 427
           +L +KP+W F+   KG VP LE
Sbjct: 50  HLQEKPDWYFSKHYKGQVPTLE 71


>L16622-2|ABB51199.1|  246|Caenorhabditis elegans Hypothetical
           protein C02D5.3b protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 NLDQKPEWIFNFSPKGTVPXLE 427
           +L +KP+W F+   KG VP LE
Sbjct: 50  HLQEKPDWYFSKHYKGQVPTLE 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,928,774
Number of Sequences: 27780
Number of extensions: 164209
Number of successful extensions: 300
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)