Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a24
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   3.2  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   5.6  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.4  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   7.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    25   7.4  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   7.4  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   7.4  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -3

Query: 530 IINHLIGF*SNINFGTRFMFFR-FLLFVSEKEILWETFKKFRYLR*IK 390
           +I   +G+  N + G+  MFFR F + + E+E++  + KKF  L  IK
Sbjct: 541 LITFSLGYICNNDHGSLNMFFRDFQIRIEEEEVI-NSLKKFIILTKIK 587


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 226 LASGYNRLTYLIGTAILRPWQ*CCFFIAVSSTFYFTQ 116
           +AS Y  L   +    + PW  CC +I +   F FT+
Sbjct: 1   MASSYLSLAARLSQCWISPWSLCCLYI-LMQFFLFTK 36


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 479 FMFFRFLLFVSEKEILWETFKKFRYLR*IK*FTVIVSFMFHLSV 348
           F FFR LL   ++E  WE   K   +     FT  +S+ +H+ V
Sbjct: 603 FCFFRMLLIYFKREFDWEVLLKLWDVL----FTNYLSYDYHIFV 642


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 258 GINRPVYSITSYVTNLQNSFCYPQN 332
           G+   VY  T  +++  N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -2

Query: 537 YFDHQPFNRVLKQYQFRYAFYVF 469
           +F H+ F+ +L +Y+ +  FY++
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLY 86


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 186 VPIKYVRRLYPLASRWNTIKNLH 254
           VP KY ++LY + +  +T++N++
Sbjct: 467 VPYKYAKKLYSILNGGSTLRNVN 489


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 197 FNWNSHLAPMAIMLLFYSC--IFNILFHTINNFPFC*MIIQN 78
           ++WN  L  +A  L + SC   F   F ++ N PFC M+  +
Sbjct: 103 YDWN--LTGVAARLGYLSCGLFFVSYFFSLKNNPFCLMLFSS 142


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 258 GINRPVYSITSYVTNLQNSFCYPQN 332
           G+   VY  T  +++  N FCYP+N
Sbjct: 194 GLEYAVYDYT--ISSSMNEFCYPKN 216


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 28  YTRCEYLTFKISVFYIQFWIII 93
           Y +C Y  F  SVFYI   + I
Sbjct: 182 YFQCSYSVFYASVFYILLGVFI 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,401
Number of Sequences: 5004
Number of extensions: 47416
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)