Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a24
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical pr...    33   0.18 
AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical ...    28   3.9  
Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    27   6.8  
Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine rece...    27   9.0  
L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.        27   9.0  

>U80843-9|AAB37969.1|  392|Caenorhabditis elegans Hypothetical
           protein C32B5.14 protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 192 IKYVRRLYPLASRWNTIKNLHLGINRPVYSITSYVTNLQNSF 317
           I+Y+ +L+PL  ++ TIK+ H+ +NR  + +   + N  N+F
Sbjct: 34  IQYLEKLFPLHVKYLTIKSDHITVNRTTFQLK--ICNKYNNF 73


>AC006644-6|AAZ91358.1|  958|Caenorhabditis elegans Hypothetical
           protein F55A3.1 protein.
          Length = 958

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 149 YSCIFNILFHTINNFPFC*MIIQN*M*KTEILKVKYSHLVYIC 21
           Y+CIF + FH I N PF   + +      +ILK     LV++C
Sbjct: 156 YNCIFYLSFHDIVNAPF--QLFKAEHFFNDILKGSLLLLVFVC 196


>Z81056-1|CAB02902.1|  319|Caenorhabditis elegans Hypothetical
           protein F09F3.1 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 263 NTQMQIFYCIPTTC*RIQSPYIFNWNSHLAPMAIMLLFYSCIFNILFHTINNF 105
           +T + IF  IP  C  +  P +F W S L P A+    Y    N     I NF
Sbjct: 149 DTALAIF-SIPEGCGFVFDPNLFIWRSELYPCALDRSEYLPYINFSATIITNF 200


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -2

Query: 441 RNSLGNL*KISLPSLNQIVYGHCFFHVSFVGIRIS 337
           RNSL NL ++ L +  Q  +GHC +  ++  +R++
Sbjct: 337 RNSLKNLTELFLGAQIQSEFGHCSYEDAWAAMRLA 371


>Z29443-5|CAA82572.1|  182|Caenorhabditis elegans Hypothetical
           protein T07C4.7 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 203 YIFNWNSHLAPMAIMLLF-YSCIFNILFHTINNFPF 99
           +I +WN    P A+  +F Y   F I+FHT+N   F
Sbjct: 104 FIRSWN---LPCAVTAVFKYIIAFPIIFHTLNGIRF 136


>U80024-6|AAW88410.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 8 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 215 IQSPYIFNWNSHLAPMAIMLLFYSCIFNILFHTINNFPFC 96
           I +P +F+ + HL P  ++L+F   IF  LF  +  + FC
Sbjct: 116 IYTPIMFHNHRHLCPSILILMF--SIFMGLFENLILYLFC 153


>L26545-1|AAA20081.1|  182|Caenorhabditis elegans CYT-1 protein.
          Length = 182

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 203 YIFNWNSHLAPMAIMLLF-YSCIFNILFHTINNFPF 99
           +I +WN    P A+  +F Y   F I+FHT+N   F
Sbjct: 104 FIRSWN---LPCAVTAVFKYIIAFPIIFHTLNGIRF 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,182
Number of Sequences: 27780
Number of extensions: 256054
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)