Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a21
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    27   2.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   3.6  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   4.8  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    26   4.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    25   6.3  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    25   6.3  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    25   8.4  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   8.4  

>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 144 KLLHEHSVQVLIDFCKLAVEYINKGAN 224
           KLL+   V++++D C  A+ Y++ G N
Sbjct: 255 KLLYSEDVEIIVDAC-WAISYLSDGPN 280


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 313 WRELSESDFRSSLALAGFSNDQQDVMSKLYNTKKKEL 423
           W ELS SDF   L +  F +    ++S L +   +EL
Sbjct: 208 WDELSRSDFDGILVVEQFKSRMTGLLSHLEDILSEEL 244


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 478 KQNLYILDHYVVTVVRLHIVPSSLYYTIYS*HLADHLKNLP 356
           K+ L ++D Y+     L +V ++L   ++   L D+L+N+P
Sbjct: 754 KEILKLVDAYISRAEDLELVGNTLIPALFEAVLLDYLQNVP 794


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 177 IDFCKLAVE-YINKGANSNKYGIAAEKLKVPLATIRNLVQAL 299
           +  C LA + Y+   +N NK  I  E  + P  + RNL  +L
Sbjct: 39  LQHCLLADQNYLLNNSNKNKGSIIEENTRKPFQSARNLQTSL 80


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 181 TSANWLWNTLI 213
           TSANW WN LI
Sbjct: 378 TSANWFWNFLI 388


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 385 VMSKLYNTKKKELYE 429
           VM+++YN K KELY+
Sbjct: 253 VMTRMYNQKNKELYK 267


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 406 TKKKELYEALQLLQRNDPKYIDFAWRFEVQ 495
           T K+ LYE L+ L+ N PK++  A   E Q
Sbjct: 144 TSKEILYEPLKDLEANYPKFLKNAKETEKQ 173


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 554 VTKSIVTTGFIPSFEFLEAICTSNLQA-KSIYFGSLRCNSCKASYSSF 414
           + K ++++G++ ++E+L  I      A  ++    L  N  K +Y+S+
Sbjct: 30  IRKEMISSGYVNTYEYLNLILPPEENAITNLSMLELATNIAKGNYTSY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,331
Number of Sequences: 5004
Number of extensions: 48815
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)