Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a21
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0329 + 2558726-2559112,2559214-2559449,2559537-2559663,256...    31   0.70 
02_04_0307 - 21905897-21906490,21906581-21906722,21907116-219072...    30   1.6  
07_01_0601 + 4464745-4465010,4465274-4466582                           29   2.8  
07_03_0167 - 14649782-14649864,14649954-14650078,14650357-146504...    28   4.9  
02_04_0305 - 21873195-21873788,21873878-21874019,21874597-218747...    28   4.9  
04_04_0147 - 23109072-23109372,23109638-23109752,23109885-231099...    27   8.6  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    27   8.6  

>03_01_0329 +
           2558726-2559112,2559214-2559449,2559537-2559663,
           2560190-2560326,2560467-2560626,2560828-2561106,
           2561750-2561920,2562636-2562717,2563397-2563623,
           2563682-2563727,2564199-2564281,2564376-2564492,
           2564965-2565036
          Length = 707

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 11  CSISVFTVYLFYCFLYGSFLLLPGSLIVRVNNDNIS 118
           C IS+ +  +++C L  S + L GS +V   ND  S
Sbjct: 582 CCISLLSCKVWWCLLAASLMALEGSPLVEAQNDKFS 617


>02_04_0307 -
           21905897-21906490,21906581-21906722,21907116-21907247,
           21907303-21907433,21908028-21908185,21908299-21908396,
           21908511-21908631,21908748-21908965,21909230-21909429
          Length = 597

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 310 YWRELSESDFRSSLALAGFSNDQQDVMS-KLYNTKKKELYEALQLLQRNDPKYIDFAWRF 486
           Y +EL + +        GFS++  +++   +YNT K+   +A+ L +RN   +I  +W F
Sbjct: 344 YQQELQDLNRWDDHGEIGFSSECVEILFYAVYNTSKQIAEKAMPLQKRNAVDHIAESWWF 403

Query: 487 EVQ 495
            V+
Sbjct: 404 TVR 406


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 550 QNPLSPLVLFLHLNS*KQSALQ-TSKQNLYILDHYVVTVVRLHIVPSSL 407
           QNP   L L       ++SA+Q T   ++Y  DH+V+T     I P+S+
Sbjct: 19  QNPECHLRLRARQQRPQESAVQSTLSSSIYFSDHFVLTPPPFQITPTSI 67


>07_03_0167 -
           14649782-14649864,14649954-14650078,14650357-14650400,
           14650873-14651003,14652469-14652559,14653335-14653445,
           14653623-14653774,14653863-14654067,14654436-14654764,
           14654850-14655309
          Length = 576

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -2

Query: 581 CKAKLLGLIVTKSIVTTGFIPSFEFLEAICTSNLQAKSIYFGSLRCNSCKASYSSFFFVL 402
           C + LL L  T  + T G +PS   L+    ++  A+S  F       C  SYS   FV 
Sbjct: 67  CSSSLLSL--TPCLETIGDVPSTSSLQTEPAADHHARSCTFSDGIIYICFHSYSQ--FVP 122

Query: 401 YNLLITSC 378
           +++L + C
Sbjct: 123 FHILTSHC 130


>02_04_0305 -
           21873195-21873788,21873878-21874019,21874597-21874782,
           21874911-21875058,21875172-21875269,21875384-21875469,
           21875741-21875825,21879298-21879478,21879682-21879874,
           21881429-21881566,21881892-21881900
          Length = 619

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 GFSNDQQDVMS-KLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQ 495
           GFS++  +++   +YNT K+   +A+ L +RN   +I  +W F V+
Sbjct: 383 GFSSECVEILFYAIYNTSKQIAEKAVPLQKRNVVDHIAESWWFTVR 428


>04_04_0147 -
           23109072-23109372,23109638-23109752,23109885-23109970,
           23111398-23111654
          Length = 252

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 382 DVMSKLYNTKKKELYEALQLLQRNDPKYIDFAWRFEVQIASRNSNEGIKPVVTM 543
           ++MS+ Y  +  E    +  L+RN   ++DF  RFE+ +   +    I+  +T+
Sbjct: 121 EIMSQ-YGLEPHEYGPVVDGLRRNPQAWLDFMMRFELGLEKPDPKRAIQSALTI 173


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = +1

Query: 322 LSESDFRSSLALAGFSNDQQDVMSKLYNTKKKELYEALQLLQRNDPKYIDFAW--RFEVQ 495
           LS S F+    L+G S+D Q  +  +    K +  +ALQ+ + +D    D AW  R E  
Sbjct: 375 LSWSIFKEGHLLSG-SDDAQICLWDIKANSKNKTLDALQIFKYHDGVVEDVAWHLRHEYL 433

Query: 496 IASRNSNEGIKPVVTMDFVTMRP-KSFALHEKE 591
             S   +  +        V+ +P +S A H+ E
Sbjct: 434 FGSVGDDHNLLIWDLRSPVSTKPVQSVAAHQGE 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,919
Number of Sequences: 37544
Number of extensions: 259964
Number of successful extensions: 686
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)