Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a21
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-15|CAC42292.1|  173|Caenorhabditis elegans Hypothetical p...    32   0.27 
Z79600-11|CAC42309.1|  173|Caenorhabditis elegans Hypothetical p...    32   0.27 
AF016447-4|AAG24011.2|  352|Caenorhabditis elegans Serpentine re...    32   0.36 
Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.8  

>Z79754-15|CAC42292.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.11 protein.
          Length = 173

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  VVFQYLLFTC-FIVFCMVAFCFYPDR*SFELIMIIFL 119
           +V   LLF C F V   VA   +PDR  F+L MI+F+
Sbjct: 72  IVMYLLLFICAFYVLFTVAQVVFPDRIPFDLKMIVFI 108


>Z79600-11|CAC42309.1|  173|Caenorhabditis elegans Hypothetical
           protein F59C6.11 protein.
          Length = 173

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  VVFQYLLFTC-FIVFCMVAFCFYPDR*SFELIMIIFL 119
           +V   LLF C F V   VA   +PDR  F+L MI+F+
Sbjct: 72  IVMYLLLFICAFYVLFTVAQVVFPDRIPFDLKMIVFI 108


>AF016447-4|AAG24011.2|  352|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 18 protein.
          Length = 352

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 21/98 (21%), Positives = 43/98 (43%)
 Frame = +3

Query: 9   CVVFQYLLFTCFIVFCMVAFCFYPDR*SFELIMIIFLTELQKDHLKLLHEHSVQVLIDFC 188
           C  F+Y    C +   +  +C Y DR     +   +     K H +L+    +  LI   
Sbjct: 121 CAPFRYTFSFCSMGLAICTYCIYIDR-----LACAYYKNYTK-HQRLILAAQICQLIVIS 174

Query: 189 KLAVEYINKGANSNKYGIAAEKLKVPLATIRNLVQALV 302
            L + ++ +    N Y ++   L VP+A++ ++ +A +
Sbjct: 175 SLIIIWVYRNEEPNTYLLSC--LNVPVASVEDMAKATI 210


>Z98877-10|CAB63406.1|  314|Caenorhabditis elegans Hypothetical
           protein Y69H2.9 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 125 FCKKYYHY*LERLTI 81
           FC++YYHY   RLTI
Sbjct: 151 FCRRYYHYINNRLTI 165


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 69  CFYPDR*SFELIMIIFLTELQKDHLKLLHEHSVQVLIDFCKLAV-EYINKGANSNKYGIA 245
           C Y +   FE+  +I +  L  D   L  +  ++ +++  K AV EY      S +Y   
Sbjct: 310 CGYRNIHYFEVASVILIIGLISDEEALEEKGKIEEIVEKLKSAVDEYCKMNKRSERYHQI 369

Query: 246 AEKLKVPLATIRNL 287
            E L++ L + RNL
Sbjct: 370 CECLQL-LKSTRNL 382


>AC025723-3|AAK29935.1|  254|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.6 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 576 GKALRSHCNKIHCHHWFYSFI 514
           GK      + I  HHWFYSFI
Sbjct: 48  GKPYLEQISSICQHHWFYSFI 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,033,956
Number of Sequences: 27780
Number of extensions: 260638
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)