Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23a18
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc... 31 0.075
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 0.93
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 3.7
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1... 25 4.9
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 4.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 4.9
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 25 4.9
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 24 6.5
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 24 6.5
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 24 8.6
>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
VIII|Schizosaccharomyces pombe|chr 1|||Manual
Length = 66
Score = 30.7 bits (66), Expect = 0.075
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 107 YVGKAQESLRLQNRHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWY 283
Y +A+ +LR R P+P +PF + + TL++ FG F PFI++ Y
Sbjct: 4 YSLQARSALR-GVRFSSSHSAPKPGSTIPFYINKKPLPTLLYFGTFGVIFSIPFIVVKY 61
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 0.93
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 249 QVFGHHLSYCGTPWQRNRCEFNIYLI 326
QV GH +S G+ ++RN FN+ +I
Sbjct: 83 QVIGHPISIIGSNYERNALIFNMCMI 108
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 3.7
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 199 IYKSICSN-ISIFNLLRNRFLGTIYH 273
+ + IC+ S FN ++ +F TIYH
Sbjct: 1123 VLEGICAKRFSFFNAVQTQFFHTIYH 1148
>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +1
Query: 49 LHYNEQVKGFICQCFPWQELCRQSAGIIEASESTSPRRGT 168
+ N + + I PW + ++ I++ E TSP G+
Sbjct: 63 IRLNRRYRNKIASGEPWLPIAQEIGKIVDEEEITSPSDGS 102
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 41 YNNYITMSRLRALFANAFRGKSYVGKAQESL 133
+N YI + + F ++ SY+G A E+L
Sbjct: 511 HNRYIDLPYIPGSFIKVYKNGSYMGTAFENL 541
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 104 SYVGKAQESLRLQNRHHHDEGPPQPFDNLP 193
SYV Q+ L+L R+H D P + + LP
Sbjct: 24 SYVEIRQQYLKLVLRYHPDRNPGREAEVLP 53
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 76 FICQCFPWQELCRQSAGIIEASESTSPR 159
F CF W+ELC + + SES PR
Sbjct: 459 FYIFCFRWRELC-----VSDESESMEPR 481
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 155 HDEGPPQPFDNLPFKFTN 208
+D+ PP P N PF+ TN
Sbjct: 8 YDKPPPPPIINKPFEQTN 25
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 232 FNLLRNRFLGTIYHIVVLHGKEI 300
F L I+H+++ HGKEI
Sbjct: 416 FGLSFASITSVIFHVILYHGKEI 438
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 309 IHNDFFAMEYHNMINGAQKPVPKKIENTNVATYRFV 202
+HN + + + +PKKI N +A Y F+
Sbjct: 616 VHNILSEADIFVDTDKSDNTLPKKIRNAQLAQYNFI 651
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 176 VEVVPRRGDVDSEASMIPALCRHSSCHGKHWQIKPLTC 63
+E+ RR +A + ALC +S H K I TC
Sbjct: 361 IELSVRRTVGIEKALLAAALCNNSKVHNKADSILDTTC 398
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,462,332
Number of Sequences: 5004
Number of extensions: 27692
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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