Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a17
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    36   0.005
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    34   0.014
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    30   0.17 
SPAC823.10c |||mitochondrial carrier with solute carrier repeats...    29   0.53 
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    28   0.92 
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    27   1.2  
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p...    27   1.6  
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p...    26   3.7  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   8.6  

>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 161 YLKPLQGAIATTMTQ-PVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKG 3
           +   + GA A+ +   P+DV+KTR  N      +S  +++KN  K E P +FFKG
Sbjct: 215 FFTSIAGASASLIVSAPLDVIKTRIQNKNFDNPQSGFTILKNMLKFEGPTSFFKG 269


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 33.9 bits (74), Expect = 0.014
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKG 3
           + G IA  +T P DV+KTR M ++   +  + ++    A E  LA +KG
Sbjct: 267 IAGGIAAALTTPFDVVKTRIMTSQQ-RLSYVFTIKSIVAHEGFLALYKG 314


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = -3

Query: 185 EILGFKIMYLKPLQGAIATTMTQPVDVLKTR-AMNAKPG---EIKSILSLVKNTAK-ESP 21
           ++  F+ ++L    G I  T+T P DVL+ R  +N  PG     K+I S + +  K E  
Sbjct: 223 DLTAFQKLFLGGFTGIIGQTLTFPADVLRRRFQVNRIPGIGHNYKNIKSAIFHIYKTEGI 282

Query: 20  LAFFKG 3
             FF+G
Sbjct: 283 NGFFRG 288


>SPAC823.10c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVK 42
           + GA AT +T P D+LKTR +  +P   K+ L   K
Sbjct: 219 ISGATATAITNPFDMLKTR-VQLEPHIYKNFLHSAK 253



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKTRAMNAK 78
           L G I++T  QP+D+LKTR   ++
Sbjct: 23  LGGFISSTTLQPLDLLKTRCQQSQ 46


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKT 96
           L GAIA+++T P+DV+KT
Sbjct: 213 LSGAIASSLTTPLDVVKT 230


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 77  ASRSLPWSLGRPRAESLLLLSH 142
           A  S PW+LGR R  SL+ L H
Sbjct: 564 ARASRPWNLGRERQSSLIDLRH 585


>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPL-AFFKG 3
           L GAI   +  P+DV+KT+ +N +P   +S   +V+   KE+ +  F KG
Sbjct: 176 LSGAITAAVLTPLDVIKTQ-INLRP---ESYRKVVRRIYKENGIFGFEKG 221


>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 149 LQGAIATTMTQPVDVLKT 96
           + G +AT +TQP DV KT
Sbjct: 255 ISGTLATLLTQPFDVSKT 272


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 137 IATTMTQPVDVLKTR 93
           +ATT++ P+D++KTR
Sbjct: 186 VATTISTPLDIVKTR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,719
Number of Sequences: 5004
Number of extensions: 37181
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)