Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23a17
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13... 42 2e-04
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14... 42 2e-04
12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629... 35 0.043
09_04_0437 - 17587944-17588909 34 0.057
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 34 0.075
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 33 0.100
07_01_1210 - 11538233-11538349,11538532-11538612,11538697-115387... 33 0.13
11_08_0097 + 28330565-28330645,28330768-28330986,28331066-283311... 33 0.17
08_02_1016 - 23606089-23607072 32 0.30
04_04_0048 + 22351788-22352177,22353175-22353711 32 0.30
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 29 2.1
01_07_0289 + 42540059-42541141 29 2.1
01_06_1117 - 34633311-34634030,34634434-34634873,34635320-346353... 28 3.7
>12_01_0019 -
135627-135983,136564-136797,137118-137196,137268-137383,
137847-137991,138177-138594,138644-138649,139315-139945
Length = 661
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKG 3
L G +A +T P DV+KTR M A PG S+ +V + + E PL FKG
Sbjct: 564 LSGGLAAVVTTPFDVMKTRMMTAPPGTPVSMQLIVFSILRNEGPLGLFKG 613
>11_01_0021 -
143576-143932,144434-144667,144988-145066,145138-145253,
145717-145861,146048-146465,147206-147869
Length = 670
Score = 42.3 bits (95), Expect = 2e-04
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAK-ESPLAFFKG 3
L G +A +T P DV+KTR M A PG S+ +V + + E PL FKG
Sbjct: 573 LSGGLAAVVTTPFDVMKTRMMTAPPGTPVSMQLIVFSILRNEGPLGLFKG 622
>12_02_0618 -
21262021-21262117,21262429-21262466,21262933-21262986,
21263274-21263438,21263523-21263759,21263857-21263918,
21264543-21264656,21264816-21264942,21266200-21266218,
21266338-21266428,21266932-21267094,21267182-21267330,
21268147-21268287,21268368-21268533,21268568-21268631,
21268729-21269084,21269759-21269977,21270328-21270433,
21270713-21270942
Length = 865
Score = 34.7 bits (76), Expect = 0.043
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKG 3
+ GA+AT +T P +VLK R+ P +I L K A+E A +KG
Sbjct: 732 IAGALATALTNPTEVLKVRS-QMSPSRTSTIGVLKKIVAEEGVKALWKG 779
>09_04_0437 - 17587944-17588909
Length = 321
Score = 34.3 bits (75), Expect = 0.057
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -3
Query: 143 GAIATTMTQPVDVLKTRAMNAK------PGEIKSILSLVKNTAKESPLAFFKG 3
G +A + + PVDV+KTR MN K P ++ L+K E +A +KG
Sbjct: 238 GLVAASASTPVDVVKTRVMNMKVVAGAPPPYSGALDCLIKTVRSEGAMALYKG 290
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTRAMN--AKPGEIKSILSLVKNT-AKESPLAFFKG 3
L GA+A T P+D++KTR G+I S+ +L ++ +E P AF++G
Sbjct: 337 LAGAVAQTAIYPIDLVKTRLQTFACGSGKIPSLGALSRDIWMQEGPRAFYRG 388
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 33.5 bits (73), Expect = 0.100
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTR--AMNAKPGEIKSILSLVKN-TAKESPLAFFKG 3
L GA+A T PVD++KTR + G++ S+ +L ++ E P AF++G
Sbjct: 336 LAGAVAQTAIYPVDLVKTRLQTYSCVDGKVPSLGALSRDILMHEGPRAFYRG 387
>07_01_1210 -
11538233-11538349,11538532-11538612,11538697-11538758,
11539108-11539159,11539779-11539868,11539957-11540052,
11540127-11540180,11540314-11540404,11540731-11540807,
11541089-11541171,11541441-11541492
Length = 284
Score = 33.1 bits (72), Expect = 0.13
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 143 GAIATTMTQPVDVLKTRAM-NAKPGEIKSILSLVKNTAKESPL-AFFKG 3
GAI +T P+DVLKTR M + + + I+S + +E AF KG
Sbjct: 199 GAITGAITTPLDVLKTRLMVQGQANQYRGIISCAQTILREEGAGAFLKG 247
>11_08_0097 +
28330565-28330645,28330768-28330986,28331066-28331144,
28331222-28331355,28331447-28331545,28331638-28331742,
28332377-28332451,28333671-28333757,28333854-28333889
Length = 304
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -3
Query: 143 GAIATTMTQPVDVLKTRAMNAKPGEIKSILSLVKNTAKESPLAFFKG 3
G A + PVDV+K+R M +I VK + PLAF+KG
Sbjct: 227 GFFAVCVGSPVDVVKSRMMGDS-AYTSTIDCFVKTLKNDGPLAFYKG 272
>08_02_1016 - 23606089-23607072
Length = 327
Score = 31.9 bits (69), Expect = 0.30
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Frame = -3
Query: 143 GAIATTMTQPVDVLKTRAMNAK------PGEIKSILSLVKNTAKESPLAFFKG 3
G +A + PVDV+KTR MN K P +I +K E +A +KG
Sbjct: 244 GLVAAAASNPVDVVKTRVMNMKVAPGAPPPYSGAIDCALKTVRSEGVMALYKG 296
>04_04_0048 + 22351788-22352177,22353175-22353711
Length = 308
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 143 GAIATTMTQPVDVLKTRAMN-AKPGEI---KSILSLVKNTAKESPLAFFKG 3
G ATT++ P DV+KTR MN K ++ S LVK E A +KG
Sbjct: 227 GLSATTLSCPADVIKTRMMNQGKDAKVLYRNSYDCLVKTVKHEGLTALWKG 277
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -3
Query: 92 AMNAKPGEIKSILSLVKNTAKESPLAFFK 6
A N +PGE KS++ V++T +P++F K
Sbjct: 732 AGNMEPGEAKSVIQHVEDTLFNAPISFCK 760
>01_07_0289 + 42540059-42541141
Length = 360
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 149 LQGAIATTMTQPVDVLKTRAM 87
L GAI+ +T P+DV+KTR M
Sbjct: 261 LAGAISAALTTPLDVVKTRLM 281
>01_06_1117 -
34633311-34634030,34634434-34634873,34635320-34635370,
34635522-34635642
Length = 443
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 205 SRPIGFMGGRACWLCHKPYYFKHELMLSRWNGGA 306
S+ +G +GG CW + L LS W GG+
Sbjct: 40 SKAVGLVGGGDCWFFEERENHLLNLELSLWMGGS 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,402
Number of Sequences: 37544
Number of extensions: 242039
Number of successful extensions: 531
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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