Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a16
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    30   0.19 
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   1.4  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    26   4.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   4.1  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.5  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   9.5  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = -3

Query: 203  LFNSGLLHSGAYN*--FWGCDPTSDVGVTPG--FTHISSFTMKIQYNSIKL*HYLFTT 42
            LF+ GL+  G+ +   F G DP + + + P   F  ++  T  +   S+KL HYL  T
Sbjct: 1089 LFHEGLIRPGSLSSCKFEGYDPQNLISIYPPARFGDVTEVTKVLNRESVKLDHYLTKT 1146


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 265 VQHLQITSLFAILLQVEIPITCSTVGCFIRGLTINFGAVIPLLMS--ALHQDLH 110
           V HLQI   F  L++  + I+CS +      +    G +I L  S   L++ LH
Sbjct: 820 VHHLQIHDKFVSLMRERVAISCSQIASLSWDIDSPHGYIIDLSKSLIKLYKVLH 873


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 423 LMLMSCLLF*TRCSCDKTISFVIVSSTFP--HRS*CHAL 313
           +++ SCL   + C     + +VIV  TFP  +RS C A+
Sbjct: 368 MIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCAAV 406


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 482 MYSVRMWIFKMSSXPWM 532
           M + + WIF M++ PWM
Sbjct: 206 METTKAWIFTMTTSPWM 222


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 519 ELILNIHILTEYMDQFVPHLLQCG 448
           E I+N+H  ++  D+F  ++L CG
Sbjct: 33  EFIINLHDQSKNYDEFKNNVLSCG 56


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 331 VLMSRPHRS*TAANKSYNATKRVQHLQITSL 239
           +L   P RS TA N S+N+ +R+    ITSL
Sbjct: 343 MLYKFPQRSYTAPNTSFNSQRRMS--SITSL 371


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 423 LMLMSCLLF*TRCSCDKTISFVIVSSTFP--HRS*C 322
           +++ SCL   + C     + +VIV  TFP  +RS C
Sbjct: 368 MIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKC 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,215
Number of Sequences: 5004
Number of extensions: 50505
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)