Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a16
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0224 - 19198722-19198835,19198947-19199436,19200478-192006...    30   1.4  
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89...    28   4.2  
02_03_0236 + 16717320-16717496,16718082-16718240,16719410-167194...    28   4.2  
09_03_0217 + 13532018-13532405,13532706-13533175                       28   5.5  
12_01_1090 + 11337134-11337376,11338124-11338336,11338883-113389...    27   9.7  
05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447           27   9.7  

>05_04_0224 -
           19198722-19198835,19198947-19199436,19200478-19200641,
           19202534-19202632,19204069-19204175,19204278-19204401,
           19205113-19205242,19205314-19205433,19205861-19206002,
           19207243-19207326,19207651-19207742,19207855-19207944,
           19208057-19208136,19208312-19208451,19208587-19209067
          Length = 818

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 283 YNATKRVQHLQITSLFAILLQVEIPITCSTV 191
           Y A+ RV+H+ ITSLF +L  + +   C T+
Sbjct: 259 YAASYRVKHVMITSLFLVLGAMTMTWICDTI 289


>04_01_0082 +
           897026-897028,897101-897350,898454-898608,898686-898967,
           899078-899160,899335-899485,899896-899952,900279-900479
          Length = 393

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 253 ANAVPFWWHYNFYLPPFNSDEGV 321
           A+  P ++   FYL PFNSD G+
Sbjct: 332 AHGTPLYYCVGFYLVPFNSDLGL 354


>02_03_0236 +
           16717320-16717496,16718082-16718240,16719410-16719472,
           16720041-16720205,16721140-16721217,16721318-16721428,
           16721516-16721632,16721713-16721808,16722592-16722662,
           16722780-16723011
          Length = 422

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 262 VPFW-WHYNFYLPPFNSD 312
           VP W W+Y FY+ PF SD
Sbjct: 341 VPSWSWYYPFYVAPFVSD 358


>09_03_0217 + 13532018-13532405,13532706-13533175
          Length = 285

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 235 RKVMLSANAVPF-WWHYNFYLPPFNSDE 315
           +  +L     P  W+HYN+Y+P   SD+
Sbjct: 10  QSTLLDPKLAPMLWFHYNYYMPLEESDD 37


>12_01_1090 +
           11337134-11337376,11338124-11338336,11338883-11338973,
           11339356-11339411
          Length = 200

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 233 GEK*CYLQMLYPFGGIITFICRRLTPM 313
           GE+ C + +  P GG    +CR LTPM
Sbjct: 111 GERFCIMGVRTPSGGYGKGLCRPLTPM 137


>05_01_0325 - 2552808-2553895,2553999-2554300,2555014-2555447
          Length = 607

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -3

Query: 488 NTWISSSLTCSNAVQYKDQISA*CLCLAC 402
           +TWI  +L C   V  +D     C C  C
Sbjct: 49  STWICKNLACKAVVTSEDSFCKRCSCCIC 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,116
Number of Sequences: 37544
Number of extensions: 313189
Number of successful extensions: 668
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)