Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23a16
(544 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine r... 36 0.019
Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical pr... 29 1.6
U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine rece... 29 1.6
Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical p... 29 2.2
U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical pr... 29 2.2
U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 29 2.2
Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical pr... 28 5.0
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 27 6.6
L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore co... 27 8.7
AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine re... 27 8.7
>AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine
receptor, class h protein82 protein.
Length = 360
Score = 35.9 bits (79), Expect = 0.019
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -1
Query: 292 NKSYNATKRVQHLQITSLFAILLQVEIPITCSTVGCFIRGLTINFGAVIPLL--MSALHQ 119
+KS +K+ + LQI +I+LQ+ IPIT F G ++ F L +S LH
Sbjct: 241 SKSSFTSKKTRKLQIAFFASIILQISIPITFLLPTFFYLGFSVGFKYYNQALTNLSVLHA 300
Query: 118 DLH 110
LH
Sbjct: 301 SLH 303
>Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical
protein C10C5.1 protein.
Length = 846
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 244 MLSANAVPFWWHYNFYLPPFNSDEGVTSRPM 336
+L ++ P WW + F P FN D+ + P+
Sbjct: 279 VLMDSSCPEWWKFPFVAPDFNDDDLIMKWPL 309
>U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein88 protein.
Length = 351
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 274 TKRVQHLQITSLFAILLQVEIPITCSTVGCFIRGLTINFGAVIPLL--MSALHQDLH 110
+K + LQI L +ILLQ+ IP+ F ++F L +S LH +H
Sbjct: 247 SKTTRKLQIKFLASILLQISIPVLFMLPTAFYIWFAVDFNYYNQALTNLSILHSSIH 303
>Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical
protein F32B6.10 protein.
Length = 562
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -2
Query: 483 MDQFVPHLLQCGSIQRPDIGLM 418
M++F HLL+C ++QRP+ +M
Sbjct: 325 MERFFEHLLECRALQRPNYHMM 346
>U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical
protein C05D11.7a protein.
Length = 621
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 315 LIGVKRRQIKVIMPPKGYSIC 253
L+G+ R +++VI+PP Y +C
Sbjct: 91 LLGIVRDELEVILPPNAYEMC 111
>U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical
protein C05D11.7b protein.
Length = 751
Score = 29.1 bits (62), Expect = 2.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 315 LIGVKRRQIKVIMPPKGYSIC 253
L+G+ R +++VI+PP Y +C
Sbjct: 91 LLGIVRDELEVILPPNAYEMC 111
>AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein87 protein.
Length = 351
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 274 TKRVQHLQITSLFAILLQVEIPITCSTVGCFIRGLTINFGAVIPLL--MSALHQDLH 110
+K + LQI L +ILLQ+ IP+ F ++F L +S LH +H
Sbjct: 247 SKTTRKLQIKFLASILLQISIPVLFMLPTAFYIWFAVDFNYYNQALTNLSILHASIH 303
>Z81124-8|CAD56599.1| 426|Caenorhabditis elegans Hypothetical
protein T21B4.14 protein.
Length = 426
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 292 NKSYNATKRVQHLQITSLFAILLQVEIPI 206
+KS + + + + LQI S F +++QV IPI
Sbjct: 320 SKSSHVSAQTRRLQIRSFFILIIQVFIPI 348
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 264 YSICR*HHFSPFYYRLRYPSL 202
+ IC H FSP Y + +PS+
Sbjct: 674 HRICNEHEFSPVYQNIEFPSI 694
>L23651-5|AAU87829.1| 1127|Caenorhabditis elegans Nuclear pore
complex protein protein15 protein.
Length = 1127
Score = 27.1 bits (57), Expect = 8.7
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 211 VSQPVIKWRKVMLSANAVPFWW 276
+ + +I WRK ++ P WW
Sbjct: 678 IKETIISWRKTKVAIPKFPIWW 699
>AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine
receptor, class h protein83 protein.
Length = 352
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 277 ATKRVQHLQITSLFAILLQVEIPI--TCSTVGCFIRGLTINFGAVIPLLMSALHQDLH 110
A+K+ + +Q+ +I+LQ+ IP+ TV L+ F +S LH LH
Sbjct: 238 ASKKTRQMQVKYFASIILQISIPMGFMMPTVLYIFLSLSYKFYNQALTNLSILHASLH 295
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,249
Number of Sequences: 27780
Number of extensions: 286691
Number of successful extensions: 648
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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