Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte23a11
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch... 182 3e-47
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 31 0.16
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.28
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 3.4
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 3.4
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 26 6.0
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 6.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.0
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.9
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple... 25 7.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.9
>SPAC1805.02c |||electron transfer flavoprotein beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 182 bits (444), Expect = 3e-47
Identities = 93/200 (46%), Positives = 132/200 (66%), Gaps = 2/200 (1%)
Frame = +3
Query: 105 RVLVGVKRVIDYAVKIRVKPDKSGVVTDGVKHSMNPFDEIAVEEAVRMKE--KKLASEVI 278
R+LVGVKR +DY +K R+ K+ V G K S+NPF +IAVEEA+RMKE K + +
Sbjct: 5 RILVGVKRTLDYMLKPRINATKTAVDLSGQKMSINPFCDIAVEEAIRMKETLKNRIEDTL 64
Query: 279 AVSCGPSQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIV 458
V+ G + ++ LR LA G RA + V E L+P+ VAK+L + EK++LV++
Sbjct: 65 VVTAGQTSSEPILRQCLAKGIGRAALINVGEKE---LEPLSVAKLLKATVEKEKSNLVLL 121
Query: 459 GKQAIDDDSNQTAQMTAALLDWPQGTFASKIEKTDGALTITREIDGGLEVIKTKIPAVLS 638
GKQAIDDD++QT M AA+L WPQ T ASK+ + +TREIDGG E + + +PA+++
Sbjct: 122 GKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGDKVIVTREIDGGEETLSSTLPAIIT 181
Query: 639 ADLRLNEPRYATLPNIMKSK 698
DLRLN PR+A L +MK++
Sbjct: 182 TDLRLNVPRFANLAKVMKAR 201
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 31.1 bits (67), Expect = 0.16
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Frame = -3
Query: 658 SFSRRSALSTAGIFVL-ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVICAVWLE 482
SF++ S+LS++ + TS S+S + A S S +P S+ ++
Sbjct: 504 SFTKFSSLSSSQLSTENFTSASSSLS--LTNAKSSLSTPSTTIPTSNSS-----VSLQTS 556
Query: 481 SSSMACLPTITKSAFSSCDSFAKIFAT*MGCNVSYSAPATST*IARSAPIARAVLRVSCA 302
SS + P I+ S ++ S + + N SY TS+ I S+ + L C+
Sbjct: 557 SSLIISSPIISSSLTATSTSTPALTHSITPSNTSY----TSSLIPSSSTDYSSSLITVCS 612
Query: 301 CDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFT 155
+ E + TSLA+ S + + ++ S F+ T TT GFT
Sbjct: 613 -NVTSEISSTSLASLISTLTSQQISSNKSSEFVGQTTTEYTTSGSVGFT 660
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 239 CSNERKKVSKRSHCSLLWTITSTGNSQNCSCD 334
CSN ++S S SL+ T+TS S N S +
Sbjct: 611 CSNVTSEISSTSLASLISTLTSQQISSNKSSE 642
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.28
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Frame = -3
Query: 493 VWLESSSMACLPTITKSAFSSCDSFAKIFAT*MGCNVSYS-APATST*IARSAPIARAVL 317
V + SSS++ +T S FSS S + S + + A T + S + +V+
Sbjct: 157 VSISSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVV 216
Query: 316 RVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIECFTPSVTTPDLSGFTRIFTA* 137
S + + +TS + S I + SS++ S+ + + S T S + I ++
Sbjct: 217 SSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSS 276
Query: 136 SITLLTPTRT 107
S + +PT T
Sbjct: 277 SSSSSSPTST 286
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3
Query: 595 PSISRVIVRAPSVFSIFDANVPCGQS 518
PS+S V RAP FS +ANVP G++
Sbjct: 285 PSMSYVY-RAPESFSSINANVPYGRN 309
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -3
Query: 481 SSSMACLPTITKSAFSSCDSFAKIFAT*MGCNVSYSAPATST*IARSAPIARAV 320
SSS + PTIT+S+ S+ S N SYS+P +S + S I ++
Sbjct: 781 SSSSSATPTITQSSISTSVSSQS------SMNSSYSSPISSNSVTSSTSIISSI 828
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 610 ITSKPPSISRVIVRAPSVFSIFDANVPCGQSNKAAVI 500
ITS P+ S++ VR + S FD ++P G S A I
Sbjct: 143 ITSSTPTPSQLPVRPSTSLSFFD-DIPLGPSFSAETI 178
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 25.8 bits (54), Expect = 6.0
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = +3
Query: 297 SQAQETLRTALAMGADRAIHVEVAGAEYDTLQPIHVAKILAKLSQDEKADLVIVGKQAID 476
SQ + LR H++ + E DT + + + + K QDE L + K+AID
Sbjct: 6 SQPEFVLRAPTEFSEKFVRHLQES-TETDTSRYMDMENYIQKRVQDELKQLQLRQKKAID 64
Query: 477 DDSNQTAQMTAALLDWPQGTFASKI 551
+ + A + QG+ S +
Sbjct: 65 AIQEEEWKSNAKTIKDSQGSLDSNL 89
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -3
Query: 376 SAPATS-T*IARSAPIARAVLRVSCACDGPQETAMTSLANFFSFIRTASSTAISSKGFIE 200
S P TS T + S PI + + V+ + T + + S SSTAI+S +
Sbjct: 3273 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALN 3331
Query: 199 CFTPSVTTPDLSGFTRIFTA*SITLLTPTRTRDI 98
TP ++ L+ T I ++ + TP + +
Sbjct: 3332 TSTPITSSSVLNSSTAITSSSILNSSTPVTSSSV 3365
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.9
Identities = 22/85 (25%), Positives = 42/85 (49%)
Frame = -1
Query: 573 LEHHQSFLSLMQMFLVANLIKQQSSVLSGWSHHLWPVCQQ*LSLPSHLVTVLLRFLQHEW 394
L+ Q F+S + FL +N +S + ++H++ V + + S + T R E
Sbjct: 105 LKQIQEFISHRRSFLNSNANSVESEKILAENNHMFNVKSKLSNKESFIKTRRPR-TNGEL 163
Query: 393 AVMCHIQPQPLQHE*LDLHPSQEQF 319
+ + +QP+ + E ++ HPSQ F
Sbjct: 164 SDLS-LQPKRIFSEPVNSHPSQSMF 187
>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 541 ANVPCGQSNKAAVICAVWLES--SSMACL 461
A+ PCG+ KAA C V+ +S M CL
Sbjct: 206 AHGPCGEEFKAAFSCFVYSKSEPKGMECL 234
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 7.9
Identities = 27/130 (20%), Positives = 52/130 (40%)
Frame = -3
Query: 568 APSVFSIFDANVPCGQSNKAAVICAVWLESSSMACLPTITKSAFSSCDSFAKIFAT*MGC 389
+PS S P S+ ++ + SSS + + + S+ SS S + ++
Sbjct: 143 SPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 202
Query: 388 NVSYSAPATST*IARSAPIARAVLRVSCACDGPQETAMTSLANFFSFIRTASSTAISSKG 209
+ S S P TS+ + + + + S + ++ + + +FI T + T SS
Sbjct: 203 SSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSS 262
Query: 208 FIECFTPSVT 179
PS T
Sbjct: 263 STSSEVPSST 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,235
Number of Sequences: 5004
Number of extensions: 56104
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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