Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a09
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0565 + 34747278-34748066,34748170-34748406,34749777-347498...    31   0.60 
01_01_0126 - 1159370-1159657,1161665-1161811,1162832-1162891,116...    31   0.79 
11_01_0673 - 5491694-5493102,5493386-5493995                           28   5.6  

>03_06_0565 +
           34747278-34748066,34748170-34748406,34749777-34749869,
           34751752-34751988,34752398-34752584,34752956-34753028,
           34753145-34753289,34753670-34753779,34754127-34754258,
           34754328-34754469,34754545-34754679,34756278-34756435,
           34757327-34757401,34757505-34757643,34757838-34757952,
           34758016-34758107,34758500-34758613
          Length = 990

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 183 FRLTPDPGSLPLLSQTPSLVVKCDQEGD 266
           FRL P+P S P+LS  PS++ +C Q  D
Sbjct: 287 FRL-PEPFSRPILSANPSIIARCLQPSD 313


>01_01_0126 -
           1159370-1159657,1161665-1161811,1162832-1162891,
           1163021-1163203,1163336-1163569
          Length = 303

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
 Frame = +3

Query: 138 SPHSKTGKATALAEDFRLTPDPGSLPLLSQTPSLVVKCDQEGD-----NTCKILCNALAT 302
           SPH + G+  +LA     +PD    P  SQ+PS   +    GD      + K+L  A A 
Sbjct: 36  SPHRRRGRRLSLAASSAASPDLEKEP--SQSPSPSPQEKSPGDLSAVAESVKVLKEA-AK 92

Query: 303 ATKAKGPEILCSRLKDVNELKL--SAFYKT 386
             K   PE+L + L  + + KL  S F++T
Sbjct: 93  TRKVPSPELLAA-LAKIKKAKLDTSTFFET 121


>11_01_0673 - 5491694-5493102,5493386-5493995
          Length = 672

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 139 RPIRRPERQLLLRRISD*RQILEVCPYFLKHQVWSSNV 252
           RPI  PE +L+  +IS+    L +  + +K  VWS+ +
Sbjct: 107 RPITEPELKLVQMKISEDGSSLVIINHAIKSIVWSTQI 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,153
Number of Sequences: 37544
Number of extensions: 310884
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)