Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a09
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.4  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   7.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.8  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   7.8  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 113 LAEVVPVSIAPFEDRKGNCSCGGFPTDARSWKSA 214
           + E    + A   D +  C   GFP    +WK A
Sbjct: 682 ILEPTDKAFAQGSDARVECKADGFPKPQVTWKKA 715



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 410 CVTPWFVARFVK 375
           CV P FVA FVK
Sbjct: 124 CVVPSFVADFVK 135


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 LRRISD*RQILEVCPYFLKHQVWSSNVI 255
           ++R+   R  L+  P+F  H+V  S+++
Sbjct: 458 IQRLKAIRATLKASPFFASHEVVGSSLL 485


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 LRRISD*RQILEVCPYFLKHQVWSSNVI 255
           ++R+   R  L+  P+F  H+V  S+++
Sbjct: 373 IQRLKAIRATLKASPFFASHEVVGSSLL 400


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 172 LRRISD*RQILEVCPYFLKHQVWSSNVI 255
           ++R+   R  L+  P+F  H+V  S+++
Sbjct: 692 IQRLKAIRATLKASPFFASHEVVGSSLL 719


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 KCDQEGDNTCKILCNALATATK 311
           +C  EG+   ++L +ALAT  K
Sbjct: 56  RCTAEGNELKRVLPDALATDCK 77


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  ICILMLVGINYFLLAEVVP 130
           I IL+ + + + LLAE++P
Sbjct: 276 ISILLSLTVFFLLLAEIIP 294


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 74  ICILMLVGINYFLLAEVVP 130
           I IL+ + + + LLAE++P
Sbjct: 272 ISILLSLTVFFLLLAEIIP 290


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 208 VCPYFLKHQV 237
           +CPY LKH++
Sbjct: 454 LCPYTLKHKI 463


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 KCDQEGDNTCKILCNALATATK 311
           +C  EG+   ++L +ALAT  K
Sbjct: 56  RCTAEGNELKRVLPDALATDCK 77


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 246 KCDQEGDNTCKILCNALATATK 311
           +C  EG+   ++L +ALAT  K
Sbjct: 56  RCTAEGNELKRVLPDALATDCK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,886
Number of Sequences: 438
Number of extensions: 3492
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)