Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a07
         (554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    31   0.47 
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242...    27   7.6  
04_04_1427 + 33491847-33491888,33493504-33493623,33493740-334939...    27   7.6  
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114...    27   7.6  

>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 212 DQPRHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGI 328
           D  RHF P  + R    V F+P+ G ++ KV  +  RG+
Sbjct: 533 DVQRHFRPELISRLTEMVVFRPLSGEQLRKVARLQLRGM 571


>12_02_1263 +
           27423411-27423464,27423985-27424104,27424200-27424298,
           27424405-27424542,27424647-27424706,27424865-27425044,
           27425132-27425338,27425415-27425534,27425609-27425728,
           27425819-27425941,27426074-27426178,27426379-27426523,
           27426967-27427131,27427228-27427466,27427553-27427585,
           27427894-27427975,27428100-27428260,27428422-27428607,
           27428700-27428882,27428969-27429147,27429386-27429482
          Length = 931

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 272 KPIPGTEVWKVREVLTRGILLAHSLA 349
           KP P  + WK+ E+ T G++L   LA
Sbjct: 675 KPSPLPDSWKLAEIFTTGVVLGGYLA 700


>04_04_1427 +
           33491847-33491888,33493504-33493623,33493740-33493976,
           33494754-33495638,33495733-33495837,33495920-33496064,
           33496146-33496310,33496391-33496629,33496724-33496756,
           33496840-33496921,33497017-33497177,33497282-33497455,
           33497549-33497731,33497832-33498019,33498155-33498251
          Length = 951

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 272 KPIPGTEVWKVREVLTRGILLAHSLA 349
           KP P  + WK++E+   GI+L   LA
Sbjct: 696 KPSPLPDSWKLKEIFATGIVLGSYLA 721


>03_05_0742 +
           27310404-27310457,27311281-27311286,27311350-27311469,
           27311597-27311695,27311787-27311795,27311843-27311980,
           27312084-27312218,27312308-27312517,27312592-27312798,
           27312891-27313010,27313079-27313198,27313279-27313401,
           27313501-27313605,27313764-27313908,27314658-27315148,
           27315236-27315268,27315556-27315637,27315747-27315907,
           27316021-27316206,27316294-27316476,27316573-27316751,
           27317009-27317105
          Length = 1000

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 272 KPIPGTEVWKVREVLTRGILLAHSLA 349
           KP P  + WK+ E+ T G++L   LA
Sbjct: 744 KPSPLPDSWKLAEIFTTGVVLGGYLA 769


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,409,818
Number of Sequences: 37544
Number of extensions: 195671
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)