Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a06
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   7.7  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 MGGVMPRNLRNSGFNPYRPSSSFSHRSKEFIHD 354
           +G +M  ++ +   N Y    +F H +  +IHD
Sbjct: 345 LGNIMEASILSPNQNVYGDLHNFGHVAISYIHD 377


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 395 SQPSKLCFYKINYRSWINSLDLW 327
           +QP K   +K N R W+  L +W
Sbjct: 289 TQPIKYAKHKNNRRVWLTILLVW 311


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 518 NSHPCSWRFCHVEASRTHKD*NPGPQIQ 435
           +S+P + +  H      H    PGPQ++
Sbjct: 451 SSYPAAIQIGHTPHHHPHPPETPGPQVE 478


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 67  ACYWERSKN 93
           +CYW R KN
Sbjct: 141 SCYWPRGKN 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,798
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)