Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a04
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    30   1.8  
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287...    28   7.4  
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    27   9.8  

>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 470 RNLYTTKSECADVRQKQIDTNDTIDLLLKENKNMSNELENLANFIE 607
           + L T K ECAD  ++Q +    + + + E  ++  E+E L   +E
Sbjct: 348 QGLETLKKECADKSKQQSELELELSISISERDSLRQEIEELKRSLE 393


>04_01_0227 -
           2877303-2877659,2877755-2877897,2878102-2878183,
           2878289-2878291
          Length = 194

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 470 RNLYTTKSECADVRQKQIDTNDTIDLLLKENKNMSNELENLANFIELCYKELQXIRNE 643
           ++L   K +   V  KQI   +   LL +E +    + ENL + +E   KE +  + E
Sbjct: 88  KDLQNMKKQKEAVESKQIKQEEGYKLLQQEQRKWKRDKENLNSKLEKKTKETKDAKEE 145


>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173 RMANLA-GPGSIKMNNEVESKKIHNALSAIAKEMQSYQ 283
           +M+NL  G  S KM+N     +  NAL A AK+  SYQ
Sbjct: 627 KMSNLGNGSQSSKMSNLGNGSQSLNALKAEAKQDSSYQ 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,798,616
Number of Sequences: 37544
Number of extensions: 215284
Number of successful extensions: 489
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)