Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a03
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.35 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    28   0.46 
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    26   1.8  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   3.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    24   7.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    24   9.8  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    24   9.8  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    24   9.8  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 259  YNNMAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 140
            Y + AAI +E +SRYIST+    + I +   + II +YL+
Sbjct: 1033 YRDAAAIIYEKLSRYISTT----ELIGKKERTFIIEHYLI 1068


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +2

Query: 53  TIEARLRSGIPAT-----TAMKLDCHGLKKSTDLHKIIVDDNRM 169
           T++ RLR  +P +        KL+  G+KK T LHK +++  ++
Sbjct: 268 TLKKRLRGVLPPSFLTLQEKKKLENRGVKKKTSLHKSVIEGEKI 311


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -3

Query: 210 QHPRSKFNESGAXXXXXXXXXXLCKSVLFFNPWQSNFMAVVAGIPLLSLASIVKISDCY 34
           + P  KF+ SGA           CK    ++PW +    +VA + + S A  +   D +
Sbjct: 96  RQPDQKFSFSGAPLSDLQDAVVPCKKQTGYHPWIAQSGTLVADLLMCSGADHIITMDLH 154


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 103 FHGGCSGNPTPESCFNCEDI*LLL 32
           F  GCS NP    C NC+++  LL
Sbjct: 38  FFDGCSLNPNIIKCGNCKNLCRLL 61


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 270 YNRYTTIWRRSNSKQFPGIFQHPRSKFNES 181
           ++ YTT+W   N+   PG++ +  +++  S
Sbjct: 409 FSGYTTVWCPQNAVFVPGLWANLATRYRAS 438


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 132 VLFFNPWQSNFMAVVAGIPLLSL 64
           V+FF PWQ   +A     PL S+
Sbjct: 342 VMFFLPWQGKVIAGTTDKPLSSV 364


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 25  PKIITIRYLHN*SKTQEWDSRYNRHEIG 108
           P +IT+ YLH  +  ++  S+  R+ IG
Sbjct: 407 PSVITLEYLHGIALGKQKYSQATRNHIG 434


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 119 LKKSTDLHKIIVDDNRMSHAP 181
           L+KS  LH I++D N   H P
Sbjct: 196 LQKSHSLHDILLDTNDDDHFP 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,512
Number of Sequences: 5004
Number of extensions: 33659
Number of successful extensions: 68
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)