Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a03
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0380 + 18335903-18337837                                         29   1.4  
04_03_0737 - 19152942-19154930                                         28   2.4  
04_03_0739 + 19180048-19182039                                         27   4.1  
11_08_0033 + 27820563-27823482,27823593-27823996                       26   9.6  
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    26   9.6  
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543...    26   9.6  

>02_03_0380 + 18335903-18337837
          Length = 644

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 250 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 140
           M AI  +   R I T AF+   I  +T S+  HNYL+
Sbjct: 163 MVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLV 199


>04_03_0737 - 19152942-19154930
          Length = 662

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 250 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 140
           + AI  +   R I T AF+   I  +T S+  HNYL+
Sbjct: 181 LVAITGQVPRRMIGTDAFQETPIVELTRSITKHNYLV 217


>04_03_0739 + 19180048-19182039
          Length = 663

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 250 MAAIEFETISRYISTSAFEIQRIRRMTHSVIIHNYLM 140
           + AI  +   R I T AF+   I   T S+  HNYL+
Sbjct: 177 LVAITGQAPRRMIGTDAFQETPIVEFTRSITKHNYLI 213


>11_08_0033 + 27820563-27823482,27823593-27823996
          Length = 1107

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 182 QAHDSFCYHPQLSYVNL 132
           Q  +S+ YHP L+Y+NL
Sbjct: 632 QLPNSYAYHPMLTYLNL 648


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 205 MLKYTGKLFRIRSPPYCCISIVILKDLFEPVFNFKRLMYT 324
           M +  G L +I  PP    ++V+  +  E    FK+L+YT
Sbjct: 581 MFRKHGSLDKIILPPTRVFALVVFVEATEARHAFKKLLYT 620


>01_02_0116 -
           11252220-11253313,11253398-11253559,11253977-11254306,
           11254328-11254377,11255195-11255389,11255532-11255625,
           11255713-11255961,11256831-11256892,11257434-11257534,
           11257766-11257880,11258384-11258475,11259197-11259333,
           11259721-11259760
          Length = 906

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 264 RYTTIWRRSNSKQFPGIF 211
           RY  IWRR N  Q P  F
Sbjct: 659 RYPEIWRRENLTQIPSTF 676


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,282
Number of Sequences: 37544
Number of extensions: 183902
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)