Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte23a03
         (395 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   6.4  
U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    27   6.4  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    27   6.4  
U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family ...    27   6.4  
AF000266-1|AAC71170.1|  193|Caenorhabditis elegans Hypothetical ...    27   6.4  
Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    26   8.5  

>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical protein
            ZK675.1 protein.
          Length = 1405

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 135  SVLFFNPWQSNFMAVVAGIPLLSLASIV 52
            SVL FNPW +  +  + GI    LA  +
Sbjct: 1196 SVLLFNPWAALMVVCILGIMTCELAGFM 1223


>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 248 GGDRIRNNFPVYFNIRVRNSTNQAHDSFCYHPQLSYVN--LCFFL 120
           G D +RN+ P+   I   N  ++ +DS  Y    S VN  LC++L
Sbjct: 370 GLDALRNSHPIEVEIDNPNELDEIYDSITYAKSNS-VNRMLCYYL 413


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform b
           protein.
          Length = 948

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 248 GGDRIRNNFPVYFNIRVRNSTNQAHDSFCYHPQLSYVN--LCFFL 120
           G D +RN+ P+   I   N  ++ +DS  Y    S VN  LC++L
Sbjct: 434 GLDALRNSHPIEVEIDNPNELDEIYDSITYAKSNS-VNRMLCYYL 477


>U23176-2|AAC46717.2|  667|Caenorhabditis elegans Patched family
           protein 2 protein.
          Length = 667

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 135 SVLFFNPWQSNFMAVVAGIPLLSLASIV 52
           SVL FNPW +  +  + GI    LA  +
Sbjct: 567 SVLLFNPWAALMVVCILGIMTCELAGFM 594


>AF000266-1|AAC71170.1|  193|Caenorhabditis elegans Hypothetical
           protein W08F4.5 protein.
          Length = 193

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 391 FFREKTFYLLICFFNPYRCFSFR 323
           F   +T   LIC  NP RC SFR
Sbjct: 16  FANSRTLTDLICKLNPSRCDSFR 38


>Z83128-4|CAB05639.1|  348|Caenorhabditis elegans Hypothetical
           protein W01D2.5 protein.
          Length = 348

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 208 LKYTGKLFRIRSPPYCCI 261
           L+Y  +    RSPP+CCI
Sbjct: 145 LQYDDRPIDFRSPPFCCI 162


>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +1

Query: 13  LFIHPKIITIRYLHN*SKTQEWDSRYNRHEIGLPWIKK 126
           +FI   + ++ Y    +KT EW ++ ++H   +P +++
Sbjct: 577 MFIRQNLYSVEYDELINKTYEWPAKDSKHGFPVPVLRR 614


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,088,361
Number of Sequences: 27780
Number of extensions: 182625
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)