Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22p18
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    57   2e-09
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.37 
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   2.6  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    26   3.4  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   4.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   6.0  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   6.0  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   7.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   7.9  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
 Frame = +3

Query: 318 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 494
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDAKGVISGKLET 58

Query: 495 KFAVKDYGLTFTEKWNTDNTLATDI 569
            F  K  GLT ++ W T N L + +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKV 83


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 39  NIYKILLKIMLNFDDILIFFNINQLRKLYDRLPFVDAAVTQETIS 173
           N Y ILL +  +F+ +L   N N L   ++   FVD+  +   +S
Sbjct: 2   NSYAILLSLFFSFERLLTLANANSLYSPFNNSSFVDSDTSFSDLS 46


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 414 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 563
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 461 LVGGDSAGEFNTRLALGLQVEFENTKVIALAEDIIG 354
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 412 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 504
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -3

Query: 278 FIFLALYCLIIWTLNFTIFIFANYHLSY 195
           F+ + ++CL  W L +  F  + +H +Y
Sbjct: 585 FVIVQIFCLARWNLGYNDFGPSAFHYNY 612


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +3

Query: 27  FYLSNIYKILLKIMLNFDDILIFFNINQLRKLYDRLPFVD 146
           F+++ + KIL K  L  +D+L+  NIN + +   R+ F++
Sbjct: 324 FHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVKFLE 363


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 30  YLSNIYKILLKIMLNFDDILIFFNIN 107
           + SNIY+IL K+   F  ++ +F IN
Sbjct: 583 WFSNIYRILGKVTYKFLKLVQYFIIN 608


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 438 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 563
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,051
Number of Sequences: 5004
Number of extensions: 50587
Number of successful extensions: 176
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)