Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte22p16
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    28   1.6  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   2.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.8  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.8  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    26   4.8  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   6.4  

>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 520 VVRFISPVGNDIVL--INH-PDHIQKVYTIEGDCPVRSTLDSLENTVLNTENHIY 675
           ++ F+S   + IVL  IN   D IQ+VYT++   PV+S   S++  +     H++
Sbjct: 293 LISFLSTKTDKIVLLPINALKDLIQRVYTVQLSLPVKSVESSVQALLFMVLPHLH 347


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 354 RSEIIEVFVDSASVFIGYRHSTDCWYTDIWSQHRNL 461
           R+E I VF+D A+   G    T  W TD +S ++++
Sbjct: 103 RNESIYVFLDLANPKTGIDRDTPTWNTDQFSSYQSV 138


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 27/100 (27%), Positives = 36/100 (36%)
 Frame = +1

Query: 187  AIPQQLSKDDLKQEHSPIGALPVENKNTNEIFPTARVIPMMLTNKESVVLPFDDVPGPKS 366
            A+P      D    H     L   N    +  P     P++ +N  S V P  D      
Sbjct: 1026 ALPSATLDSDKSSLHKRSAELSRNNSPRPDFLPLPNQ-PLLHSNLHSPVSPVVDSNEDSR 1084

Query: 367  LKYLSTVRQYLSDIGTQLTAGILTFGVNIGTFINSRKPLK 486
            LK+LST R   S  G   T  ++ F    G +  S K  K
Sbjct: 1085 LKFLSTQRPAFS-FGPCGTI-VMAFSTPSGLYTTSGKGTK 1122


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 512 YSSNRAENFFKGFLLF 465
           Y+SNRA  FFKG L F
Sbjct: 441 YTSNRAGMFFKGLLTF 456


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 563 ISTMSLPTGL--IKRTTGPYSSNRAENFFKGF 474
           ++T+  P  L  +KR T P SSN + N F GF
Sbjct: 419 VNTVRTPRQLLNVKRPTEPASSNSSLNNFSGF 450


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 24/96 (25%), Positives = 39/96 (40%)
 Frame = +1

Query: 202 LSKDDLKQEHSPIGALPVENKNTNEIFPTARVIPMMLTNKESVVLPFDDVPGPKSLKYLS 381
           + +DD++ E     A  +EN NTN       V       K  V + +D        KY+S
Sbjct: 739 VERDDIEVEEDDAEAQELENDNTNTTNGNDNVSSEEALQKPKVKITYD--------KYVS 790

Query: 382 TVRQYLSDIGTQLTAGILTFGVNIGTFINSRKPLKK 489
            +   L  +  + T G+   GV  G  + S   L++
Sbjct: 791 IMNGILQVLRQRSTEGV--DGVPAGDLVQSYLELRE 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,726
Number of Sequences: 5004
Number of extensions: 63773
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)