Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22p15
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098499-1|AAC67397.1| 245|Caenorhabditis elegans Hypothetical ... 33 0.20
AF125442-9|AAD12788.1| 333|Caenorhabditis elegans Hypothetical ... 30 1.9
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 3.3
AF025457-6|AAB70960.1| 333|Caenorhabditis elegans Hypothetical ... 29 3.3
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z92830-12|CAE17777.1| 191|Caenorhabditis elegans Hypothetical p... 28 5.7
AF016682-5|AAB66184.1| 409|Caenorhabditis elegans Hypothetical ... 28 5.7
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 7.5
U41553-6|AAO91696.1| 297|Caenorhabditis elegans Hypothetical pr... 28 7.5
U41553-5|AAO91694.1| 468|Caenorhabditis elegans Hypothetical pr... 28 7.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 7.5
AC006776-1|AAF60626.2| 616|Caenorhabditis elegans Hypothetical ... 28 7.5
>AF098499-1|AAC67397.1| 245|Caenorhabditis elegans Hypothetical
protein C43H8.2 protein.
Length = 245
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 486 MKLLESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYK 620
MK LES ++ S+ L D + ++E+YS KM SEK +K
Sbjct: 1 MKFLESSEMDVFSQTLVTGAIDCVIDFKLETYSSKMVTSEKKQWK 45
>AF125442-9|AAD12788.1| 333|Caenorhabditis elegans Hypothetical
protein H04M03.3 protein.
Length = 333
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 284 TSQKKEKRMVLEVAVLVLIIHKLVDGFTQWLASLHFLECRNTTVIFKNQNP 132
T + +E M+ + +I HK++D SLHF+ + V F N P
Sbjct: 143 TREDREATMMTNLVSSYMIAHKIIDSRRDDQRSLHFVFSTSILVKFHNATP 193
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 657 EDYE*FLHQQ*TSYRKLSHCQPFCSCSFQRGLVQH 553
E YE F+++ +RK C PFC+ R ++H
Sbjct: 2189 ESYETFVNEYIHRWRKFGMCSPFCNEDETRVFLEH 2223
>AF025457-6|AAB70960.1| 333|Caenorhabditis elegans Hypothetical
protein C08E3.7 protein.
Length = 333
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 498 ESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYKKFTADG--ETTHSLQALSP 671
E LE ++ L ++ + V+ S+ ++G E KKF DG ET S ++L+
Sbjct: 120 EENYLELCNKDLKLMMENRKVE--FYSFGVSISGIETELSKKFI-DGIEETMKSAKSLTS 176
Query: 672 PESVTYSRSLSG 707
TY+ SLSG
Sbjct: 177 RTVATYNTSLSG 188
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -3
Query: 210 WVYTMARVTSLF------RMQKHNGYFQKPKSIEDIVAKYNHYWKTN 88
W YT ++T + R +N YF ++ ED + + H+W+T+
Sbjct: 239 WPYTPEKITDAYFVGCDGRTDCYNPYFYYDEAREDHLVELYHFWRTD 285
>Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical
protein T22C8.5 protein.
Length = 166
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 591 MAGSEKAFYKKFTADGETTHSLQALSPPES 680
M G+ F++ + + G HSL ++SPP+S
Sbjct: 1 MDGAATKFFRPWESHGSYHHSLPSISPPDS 30
>Z92830-12|CAE17777.1| 191|Caenorhabditis elegans Hypothetical
protein F11A5.15 protein.
Length = 191
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -3
Query: 498 PIVSFSLILFCSNYPINRLVIIGAFIFILHHKLFLYIA---VGCMNIPFLFECK 346
P+++ S++ FC+ + + L I I++ KLF I V C+N +F+ K
Sbjct: 138 PLITISVLFFCAFFILIFLFCILGSIYVFMAKLFRNIEQTYVACLNRLMIFDEK 191
>AF016682-5|AAB66184.1| 409|Caenorhabditis elegans Hypothetical
protein T07D3.4 protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -3
Query: 132 IEDIVAKYNHYWKTNYLIS*TIFSFSKQNNLQSNHK 25
+E I+A+Y WK ++L S +++S Q N+Q+N K
Sbjct: 341 LEKILAEYGEDWKKDHLSSEYRWNYS-QKNVQTNGK 375
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 217 SLWIINTSTATSKTILFSFFCDVPAFHPRGRRTEVEFDTECEPFTLKEKRNIHT 378
S+W+ N + +++ + C P PR + EV D+E P + + HT
Sbjct: 2447 SMWLDNQKSVMAESTMADPQCASPLLSPRHQHHEVPMDSEWVP-DVNPSNHYHT 2499
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 217 SLWIINTSTATSKTILFSFFCDVPAFHPRGRRTEVEFDTECEPFTLKEKRNIHT 378
S+W+ N + +++ + C P PR + EV D+E P + + HT
Sbjct: 2447 SMWLDNQKSVMAESTMADPQCASPLLSPRHQHHEVPMDSEWVP-DVNPSNHYHT 2499
>U41553-6|AAO91696.1| 297|Caenorhabditis elegans Hypothetical
protein ZK1193.5c protein.
Length = 297
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 360 LFECKRFTLGIKFDFCSSSARMKCGNITKKGEKDGFRSCSTSINYPQTC*WVYTMARVTS 181
L+E R K D ++ ++ K N + + FR ++ I+Y Q C W +T R +S
Sbjct: 17 LYEIPRLDKWFKSD--ANPSKQKMNNYLSQLNQSPFRKNNSKISYQQICNW-FTQKRSSS 73
>U41553-5|AAO91694.1| 468|Caenorhabditis elegans Hypothetical
protein ZK1193.5a protein.
Length = 468
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -3
Query: 360 LFECKRFTLGIKFDFCSSSARMKCGNITKKGEKDGFRSCSTSINYPQTC*WVYTMARVTS 181
L+E R K D ++ ++ K N + + FR ++ I+Y Q C W +T R +S
Sbjct: 188 LYEIPRLDKWFKSD--ANPSKQKMNNYLSQLNQSPFRKNNSKISYQQICNW-FTQKRSSS 244
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 217 SLWIINTSTATSKTILFSFFCDVPAFHPRGRRTEVEFDTECEPFTLKEKRNIHT 378
S+W+ N + +++ + C P PR + EV D+E P + + HT
Sbjct: 2466 SMWLDNQKSVMAESTMADPQCASPLLSPRHQHHEVPMDSEWVP-DVNPSNHYHT 2518
>AC006776-1|AAF60626.2| 616|Caenorhabditis elegans Hypothetical
protein Y46H3C.4 protein.
Length = 616
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 453 SDNLNRIKSE-KMKLLESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAF 614
+D + + K E K+KL ESG ++ A + D V ++ K++G E F
Sbjct: 355 ADPVKKWKEEQKLKLRESGEMDEDDLATVAVEDDEGVSSAAKAVETKLSGYEYLF 409
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,737
Number of Sequences: 27780
Number of extensions: 339384
Number of successful extensions: 900
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -