Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22p13
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 3.1
SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha... 27 3.1
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 4.0
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 5.3
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 25 7.1
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 7.1
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 25 9.3
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar... 25 9.3
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2... 25 9.3
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.3
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 389 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRI-RTDSVQEDV 565
+R N +SA++ G+E D + N V + D+K+ R+ + S ++DV
Sbjct: 1831 KRHNIDSANLSR--GTERDED---IPNKRAKNKVSTDQTAADNKVTKPRLDESSSSKQDV 1885
Query: 566 LRIQDDEETEEYSSK 610
L D+ E E+ SSK
Sbjct: 1886 LNKIDESEIEQASSK 1900
>SPAC19D5.02c |||peroxisomal membrane protein Pex22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +2
Query: 398 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQ 577
+ ESA +E S I ++ G++ PQK K +K + +V ED L +
Sbjct: 127 DSESAVVEQLHPSSPIPILTTAVRKKGSRPSKPQKEKQGNKQGSKTEESPNVDEDELESE 186
Query: 578 DDEET 592
+E+T
Sbjct: 187 PEEKT 191
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 398 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLR-I 574
+EE +E + +EDI + +N+D + ++ LD E +I T + + I
Sbjct: 133 DEEKDELEEERIAEDIAQNEVEQNIDDVEDLEEVNDTLDANAESPQIETIHLTDATGNPI 192
Query: 575 QDDEETEEYSS 607
+D E++ S
Sbjct: 193 EDSSESDSEES 203
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +2
Query: 413 SIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEET 592
S+ NK + + +NV+ +PQ+ K + LE+ + + + + +
Sbjct: 69 SVTNKIDTNKLEAKDESKNVEKDATGNPQESKQEPNLEVQQTEKEKDVDSASAENESINS 128
Query: 593 EEYSSKHVRPNTQT 634
SSK TQ+
Sbjct: 129 SSSSSKECSTQTQS 142
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +2
Query: 437 EDINDSSSLRNVDGTKGVDPQKIKLDDK-LELSRIRTDSVQEDVLRIQDD 583
++I+ SL N+D DP + K++ K L SR++ SV++ LRI +D
Sbjct: 17 KEISSFGSLTNID--LHTDPYE-KVEAKALSRSRLKNQSVKKTDLRITND 63
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 428 SGSEDINDSSSLRNVDGTK-GVDPQKIKLDDKLELSRIRTDSVQEDVLRIQDDEETEEY 601
S S+ + S + V T+ K + + + + + S+++D+L+ ++DEE EE+
Sbjct: 278 SQSQTVETSGPSKEVPTTQPDASAAKPRTEFDFQTANQKFQSMKDDLLKGKNDEEAEEF 336
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 401 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 580
E ++S+EN S DSSS + + ++P+ + D+ + + + V++D D
Sbjct: 88 ELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDE--DDKHVTVEIVEDD-----D 140
Query: 581 DEE 589
DEE
Sbjct: 141 DEE 143
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/29 (27%), Positives = 20/29 (68%)
Frame = +2
Query: 386 LERRNEESASIENKSGSEDINDSSSLRNV 472
+E + + S++NK+ +ED+ D++ +R +
Sbjct: 172 VETSHYNAQSVKNKTSNEDLFDTNEMRKI 200
>SPAC6G9.03c |mug183||histone chaperone
Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
Length = 352
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 401 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLE 526
E++A + +N++SSL NVD +D ++ D E
Sbjct: 291 EKAAPVPKNPSVSYLNEASSLENVDDMDDIDVKEPLFSDNDE 332
>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 293 DPNKKESRGRRLFKKV 340
DPNK +SRG+RL K +
Sbjct: 49 DPNKVKSRGKRLRKSM 64
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 440 LQSHFYFQLMHFLRFFVLV*NFYRHRWIYFCDELL-F*IAFFPSILF 303
++SH +F L+ F+ FF+L ++ L+ F FF + F
Sbjct: 143 IKSHVHFHLIPFINFFLLYHQIILSHSLFHISHLISFHFLFFSFLSF 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,063
Number of Sequences: 5004
Number of extensions: 46027
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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