Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22p13
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 31 0.78
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 30 1.4
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 28 5.5
05_05_0299 - 23930657-23932627 28 5.5
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 28 5.5
08_02_0259 - 14974526-14974572,14974670-14974742,14974829-149748... 28 7.3
03_05_0835 - 28065505-28065656,28066547-28066604,28067535-280676... 28 7.3
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 31.1 bits (67), Expect = 0.78
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +2
Query: 389 ERRNEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVL 568
ER+ E A+ E + ++D SSS N + D + I +DD L++ +
Sbjct: 335 ERQEESEANEEPSNKNQDEGPSSSTSNGKEVEESDDEDINIDDDLDIDELNELEASLSRT 394
Query: 569 RIQDDEETEEYSS 607
IQ E E SS
Sbjct: 395 SIQIREPGEGTSS 407
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 467 NVDGTKGVDPQKIKLDD---KLELSRIRTDSVQEDVLRIQDDEETEE 598
N K +D QK K D +LEL+ I EDV+++ +D++ E+
Sbjct: 416 NASDRKKLDDQKQKAKDDNSELELASIEQQRADEDVMKLVEDQKREK 462
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 548 SVQEDVLRIQDDEETEEYSSKHVRPNT 628
S+ +DV+ I DDE EE SSK NT
Sbjct: 616 SIPKDVMVISDDEFDEELSSKDDEMNT 642
>05_05_0299 - 23930657-23932627
Length = 656
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +2
Query: 401 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 580
++ +S + S+ + N +GT KI L DK+EL + + + D
Sbjct: 458 QDGSSAAAEGASQKKKGGKDIANGEGTNQKMKGKISLKDKVELEKEMEEYYKLDYEDTIG 517
Query: 581 DEETEEYSSKHVRPNT 628
D +T + K V+PN+
Sbjct: 518 DLKT-RFKYKQVKPNS 532
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 398 NEESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTD-SVQEDVLRI 574
+ E +++S + D ND L++ GTK LD E +++ TD ++E+
Sbjct: 485 SSEGEGSDDESDAFDSNDEKELQSARGTKQ------NLDGSSEANKLDTDEGMKEEDQLS 538
Query: 575 QDDEETEE 598
D+++TEE
Sbjct: 539 GDEDDTEE 546
>08_02_0259 -
14974526-14974572,14974670-14974742,14974829-14974891,
14975030-14975097,14975172-14975295,14976434-14976493,
14976744-14976806,14976902-14977942,14978027-14978093,
14978188-14978303,14978454-14978540,14978749-14978838,
14979128-14979214,14979366-14979428,14979509-14979566,
14980174-14980231,14980349-14980416,14980508-14980587,
14981084-14981147,14981321-14981392,14981517-14981576,
14982344-14982398,14982487-14982520,14983845-14983931,
14984036-14984122,14984211-14984408,14984509-14984639,
14984739-14984838
Length = 1066
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +2
Query: 401 EESASIENKSGSEDINDSSSLRNVDGTKGVDPQKIKLDDKLELSRIRTDSVQEDVLRIQD 580
EE I +S + D ND+S LR + ++ K D++ + + + +DV +
Sbjct: 210 EEQEEITRRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIDEIRDEILDHEYIFQDVKLTEA 269
Query: 581 DEETEEYSSK 610
+E+ Y K
Sbjct: 270 EEKEFRYKKK 279
>03_05_0835 -
28065505-28065656,28066547-28066604,28067535-28067642,
28067796-28067855,28067940-28068015,28068470-28068627,
28068787-28068849,28069003-28069142,28070793-28071882
Length = 634
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 524 ELSRIRTDSVQEDVLRIQDDEETEEYSSKHV 616
E S +RTD + D + D EE EE++ + V
Sbjct: 274 EKSEVRTDDERVDASHMSDTEEEEEFADEGV 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,637,305
Number of Sequences: 37544
Number of extensions: 241016
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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