Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte22p11
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0123 + 4537231-4537366,4538088-4538171,4538432-4538586,453... 31 0.66
10_08_0841 - 20948719-20948919,20949624-20950388,20950475-209510... 29 3.5
09_04_0623 - 19038777-19040561 29 3.5
12_02_0534 - 20103908-20105897,20106314-20107116 28 6.1
11_01_0382 - 2892887-2893161,2893593-2893717,2893801-2894013,289... 28 8.1
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 28 8.1
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 28 8.1
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684... 28 8.1
01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457 28 8.1
>09_02_0123 +
4537231-4537366,4538088-4538171,4538432-4538586,
4539115-4539294,4539814-4540169,4540797-4540953
Length = 355
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 436 NTRENSHSTQIEGEPELGCLEYVSTYNFSNLDVGF 540
++++NSH ++EG E CL Y ++ +L V F
Sbjct: 74 SSQKNSHLQKLEGAKERLCLNYADVMDYDSLSVAF 108
>10_08_0841 -
20948719-20948919,20949624-20950388,20950475-20951023,
20951097-20951237,20951313-20951519,20951556-20951724,
20951899-20952003,20952087-20952208,20952291-20952412,
20953234-20953516
Length = 887
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +1
Query: 229 GTYYLEDLPDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDKKQKIVRLT 408
GT+ D P+F T + DI+ I I R G ++ I+ E+ +DK + + +
Sbjct: 688 GTFAYMD-PEFLTTGELTARSDIYSFGIIILRLVTGKPALGIAREVEVALDKGELELLVD 746
Query: 409 KSLKEYKF 432
+S ++ F
Sbjct: 747 RSAGDWPF 754
>09_04_0623 - 19038777-19040561
Length = 594
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 571 AFPSPKILNLN-VFDKLLTVHTFEGLLKNL 657
A P LNL VFD++LTV T+ GL K++
Sbjct: 461 AAPKGSSLNLQGVFDRILTVATYGGLAKDM 490
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 524 LEKLYVLTYSKQPSSGSPSICVE*LFSLVFSNLYSFSD 411
LE+LY+ +++ G + +E L+SL + +YSF D
Sbjct: 866 LERLYLSIWTRLRRGGLNDLGLENLYSLRHATIYSFDD 903
>11_01_0382 -
2892887-2893161,2893593-2893717,2893801-2894013,
2894101-2895363,2895669-2895712
Length = 639
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 103 IPKEENRDIVLGHRSCKTCDAKWLCIENVYQK 198
IP EN D+VL RSC ++ C + V K
Sbjct: 269 IPNSENMDVVLMRRSCTLNNSMGSCEKQVVTK 300
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 151 KTCDAKWLCIENVYQKFHRPNYYDIGGTYYLEDLPDFWFTS 273
+ CD K L +E Y + RP Y + ++ +PDFW T+
Sbjct: 45 EACD-KVLELEQKYNEVRRPVY--VRRNKIIKQIPDFWLTA 82
>04_01_0126 -
1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 253 PDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDK 384
P++ + +KT GD++ I + G + G EM ++K
Sbjct: 841 PEYGYGAKTSTSGDVYSYGIMLLEMITGKSPVDQMFGGEMNLEK 884
>01_06_0718 -
31467530-31467892,31468017-31468178,31468268-31468415,
31468536-31468612,31468693-31468763,31468965-31469051,
31469138-31469602,31470357-31470659,31471151-31471202
Length = 575
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/61 (22%), Positives = 26/61 (42%)
Frame = +1
Query: 253 PDFWFTSKTEQVGDIFLLHIFIQRYCEGSFSISISHGSEMEIDKKQKIVRLTKSLKEYKF 432
P++ T K D+F + + G I +SHG + + L ++++E F
Sbjct: 356 PEYAATGKVNDRSDVFSFGVMLLELITGKKPIMVSHGDQPDTLVSWARPLLVRAVEEENF 415
Query: 433 E 435
E
Sbjct: 416 E 416
>01_01_1212 + 9763949-9764412,9765183-9765252,9765356-9765457
Length = 211
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 119 IEI*FWAIVLVKHAMQNGSVLKMFIRNSTGLIIMTL 226
I + F +++L A +GS+L+++ N++GLI +TL
Sbjct: 149 INLGFASVLLTGAAFLDGSILEIWKMNNSGLIQLTL 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,729,781
Number of Sequences: 37544
Number of extensions: 358215
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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